JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CDH2_chr18_27945966_28182130	0/0	a0004	906	3	3	0	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	a0005	906	1	0	0	0	1	0	copy fasta	CDH2	chr18	27945966	28182130
CDH3_chr16_68640310_68705292	1/0	a0001	829	221	81	37	69	7	26	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/1	a0002	829	104	2	22	66	4	9	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	a0003	829	7	1	4	0	1	1	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	a0004	829	1	0	0	1	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	a0005	829	1	1	0	0	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	a0006	829	1	0	1	0	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	a0007	829	1	1	0	0	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	a0008	829	1	1	0	0	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	a0009	829	1	1	0	0	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH4_chr20_61247261_61945617	0/0	a0001	916	59	38	17	2	0	2	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	a0002	916	43	15	13	9	0	6	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	a0003	916	2	2	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	a0004	916	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	a0005	916	1	0	0	1	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH5_chr16_66361691_66409784	0/1	a0001	784	304	75	53	139	9	27	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	1/0	a0002	784	83	13	18	28	5	18	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	a0003	784	8	0	4	0	2	2	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	a0004	784	2	0	0	2	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	a0005	784	1	0	1	0	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	a0006	784	1	0	1	0	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	a0007	784	1	0	0	0	0	1	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	a0008	784	1	0	0	1	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	a0009	784	1	0	1	0	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	a0010	784	1	1	0	0	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	a0011	784	1	1	0	0	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH6_chr5_31188686_31334146	1/1	a0001	790	332	82	52	145	14	37	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	a0002	790	4	0	0	4	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	a0003	790	1	0	0	0	0	1	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	a0004	790	1	0	0	1	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH7_chr18_65746012_65895337	0/1	a0001	785	105	27	28	23	9	17	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	1/0	a0002	785	102	58	18	7	5	13	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	a0003	785	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH8_chr16_61642250_62041438	1/1	a0001	799	165	60	29	64	4	6	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	a0002	799	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	a0003	799	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	a0004	799	1	0	1	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH9_chr5_26875597_27043586	1/1	a0001	789	119	23	31	42	5	16	copy fasta	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	a0002	789	103	46	18	27	5	7	copy fasta	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	a0003	789	14	13	1	0	0	0	copy fasta	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	a0004	789	1	0	1	0	0	0	copy fasta	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	a0005	789	1	0	1	0	0	0	copy fasta	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	a0006	789	1	0	0	0	0	1	copy fasta	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	a0007	789	1	0	0	1	0	0	copy fasta	CDH9	chr5	26875597	27043586
CDHR1_chr10_84189537_84223694	1/1	a0001	859	343	76	68	144	14	39	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	a0002	859	12	11	1	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	a0003	859	8	0	0	8	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	a0004	859	5	0	2	0	1	2	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	a0005	859	3	0	0	3	0	0	copy fasta	CDHR1	chr10	84189537	84223694