JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CDHR1_chr10_84189537_84223694	0/0	a0006	859	3	0	0	3	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	a0007	859	2	2	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	a0008	859	2	0	1	0	1	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	a0009	859	1	0	0	1	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	a0010	859	1	0	1	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	a0011	859	1	1	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	a0012	859	1	0	1	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	a0013	859	1	0	0	1	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	a0014	859	1	0	0	0	0	1	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	a0015	859	1	1	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	a0016	859	1	0	0	0	0	1	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	a0017	859	1	0	0	0	0	1	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	a0018	859	1	1	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR2_chr5_176544342_176600824	0/1	a0001	1310	110	32	30	28	7	12	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	a0002	1310	92	19	16	42	5	10	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	a0003	1310	83	1	16	48	3	15	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	1/0	a0004	1310	13	11	1	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	a0005	1310	7	2	0	0	2	3	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	a0006	1310	5	5	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	a0007	1310	5	5	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	a0008	1310	4	3	1	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	a0009	1310	3	0	3	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	a0010	1310	3	0	3	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	a0011	1310	2	2	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	a0012	1310	2	2	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	a0013	1310	2	2	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	a0014	1310	2	2	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	a0015	1310	2	0	0	2	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	a0016	1310	2	0	0	2	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	a0017	1310	1	1	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	a0018	1310	1	1	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	a0019	1310	1	0	0	1	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	a0020	1310	1	1	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	a0021	1310	1	0	0	0	1	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	a0022	1310	1	1	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	a0023	1310	1	0	0	1	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR3_chr7_105958264_106041432	1/1	a0001	885	234	53	41	99	12	27	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	a0002	885	57	4	12	37	0	4	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	a0003	885	24	7	3	11	1	2	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	a0004	885	22	13	3	2	1	3	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	a0005	885	6	0	1	3	1	1	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	a0006	885	2	0	2	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	a0007	885	2	2	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	a0008	885	2	2	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	a0009	885	1	0	0	0	1	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	a0010	885	1	0	0	1	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	a0011	885	1	1	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	a0012	885	1	0	0	1	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	a0013	885	1	0	0	0	0	1	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	a0014	885	1	1	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432