JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CDHR3_chr7_105958264_106041432	0/0	a0015	885	1	1	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	a0016	885	1	0	0	1	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	a0017	885	1	0	0	1	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR4_chr3_49785732_49804873	1/1	a0001	788	327	91	62	125	10	37	copy fasta	CDHR4	chr3	49785732	49804873
CDHR4_chr3_49785732_49804873	0/0	a0002	788	15	1	3	0	6	5	copy fasta	CDHR4	chr3	49785732	49804873
CDHR4_chr3_49785732_49804873	0/0	a0003	788	6	0	0	6	0	0	copy fasta	CDHR4	chr3	49785732	49804873
CDHR4_chr3_49785732_49804873	0/0	a0004	788	1	0	0	1	0	0	copy fasta	CDHR4	chr3	49785732	49804873
CDHR4_chr3_49785732_49804873	0/0	a0005	788	1	1	0	0	0	0	copy fasta	CDHR4	chr3	49785732	49804873
CDHR4_chr3_49785732_49804873	0/0	a0006	471	1	0	0	1	0	0	copy fasta	CDHR4	chr3	49785732	49804873
CDHR4_chr3_49785732_49804873	0/0	a0007	788	1	1	0	0	0	0	copy fasta	CDHR4	chr3	49785732	49804873
CDHR4_chr3_49785732_49804873	0/0	a0008	788	1	0	1	0	0	0	copy fasta	CDHR4	chr3	49785732	49804873
CDHR4_chr3_49785732_49804873	0/0	a0009	132	1	0	0	1	0	0	copy fasta	CDHR4	chr3	49785732	49804873
CDHR5_chr11_611583_629955	0/0	a0001	845	172	9	28	99	8	28	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0002	845	85	17	14	45	2	7	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/1	a0003	845	53	18	20	6	5	3	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0004	845	39	19	9	4	1	6	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0005	845	10	7	3	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0006	847	6	6	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0007	845	5	0	0	5	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0008	845	4	4	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0009	845	4	4	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0010	814	4	4	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0011	845	3	3	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0012	845	2	0	2	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0013	845	2	0	0	0	0	2	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0014	845	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0015	845	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0016	845	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0017	845	1	1	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0018	845	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0019	845	1	1	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0020	845	1	0	0	0	0	1	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0021	845	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0022	845	1	1	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0023	845	1	1	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0024	845	1	1	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0025	845	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0026	845	1	1	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0027	845	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0028	845	1	1	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0029	845	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0030	845	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0031	845	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0032	845	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	a0033	845	1	0	0	0	0	1	copy fasta	CDHR5	chr11	611583	629955
CDIN1_chr15_36574626_36815244	1/1	a0001	281	143	55	30	38	5	13	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	a0002	281	95	27	14	38	5	11	copy fasta	CDIN1	chr15	36574626	36815244
CDIP1_chr16_4505669_4543773	0/1	a0001	208	315	90	52	128	10	34	copy fasta	CDIP1	chr16	4505669	4543773
CDIP1_chr16_4505669_4543773	0/0	a0002	208	7	7	0	0	0	0	copy fasta	CDIP1	chr16	4505669	4543773
CDIP1_chr16_4505669_4543773	0/0	a0003	208	1	1	0	0	0	0	copy fasta	CDIP1	chr16	4505669	4543773