JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CDIPT_chr16_29853357_29868226	1/1	a0001	213	319	94	50	123	12	38	copy fasta	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	a0002	213	1	0	0	1	0	0	copy fasta	CDIPT	chr16	29853357	29868226
CDK10_chr16_89681689_89701354	1/1	a0001	360	418	95	77	176	18	50	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	a0002	360	3	3	0	0	0	0	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	a0003	360	1	0	1	0	0	0	copy fasta	CDK10	chr16	89681689	89701354
CDK11A_chr1_1697379_1729357	0/0	a0001	780	171	4	33	118	5	11	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/1	a0002	777	75	1	23	30	6	14	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0003	780	60	24	6	24	0	6	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0004	780	15	13	2	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0005	778	6	5	1	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0006	780	5	0	0	5	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0007	780	4	4	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0008	780	4	4	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0009	777	3	3	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0010	784	2	2	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	1/0	a0011	780	2	0	0	0	0	1	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0012	780	2	0	0	1	0	1	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0013	780	2	0	0	2	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0014	780	2	2	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0015	780	2	0	0	0	2	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0016	780	2	1	0	0	1	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0017	780	2	2	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0018	777	2	0	0	0	0	2	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0019	777	2	0	0	2	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0020	780	1	0	0	1	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0021	780	1	1	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0022	780	1	1	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0023	778	1	1	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0024	780	1	1	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0025	780	1	0	0	1	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0026	780	1	0	1	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0027	777	1	0	0	0	0	1	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	a0028	772	1	1	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11B_chr1_1630225_1664004	1/1	a0001	782	442	100	71	208	16	45	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	a0002	782	2	0	0	2	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	a0003	782	1	0	0	0	0	1	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	a0004	782	1	0	1	0	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK12_chr17_39456486_39539544	1/1	a0001	1490	249	70	56	85	14	22	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	a0002	1490	3	3	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	a0003	1490	2	1	1	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	a0004	1490	2	0	1	0	0	1	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	a0005	1490	1	0	0	0	0	1	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	a0006	1490	1	1	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	a0007	1490	1	1	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	a0008	1490	1	0	0	1	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK13_chr7_39945256_40104580	1/1	a0001	1512	237	86	55	55	13	26	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	a0002	1512	72	3	13	47	0	9	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	a0003	1512	4	0	0	4	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	a0004	1514	3	0	0	3	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	a0005	1512	1	0	0	1	0	0	copy fasta	CDK13	chr7	39945256	40104580