JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CDK13_chr7_39945256_40104580	0/0	a0006	1512	1	0	1	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	a0007	1512	1	1	0	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	a0008	1512	1	0	0	0	0	1	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	a0009	1512	1	0	0	0	1	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	a0010	1512	1	0	1	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK14_chr7_90591321_91215590	1/1	a0001	469	165	54	40	34	4	31	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	a0002	469	2	2	0	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	a0003	469	1	0	0	0	0	1	copy fasta	CDK14	chr7	90591321	91215590
CDK15_chr2_201801537_201900550	1/1	a0001	435	317	86	59	120	11	39	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	a0002	435	3	0	3	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	a0003	435	1	0	0	0	1	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	a0004	435	1	0	0	0	0	1	copy fasta	CDK15	chr2	201801537	201900550
CDK16_chrX_47213681_47234997	1/1	a0001	496	303	79	55	130	9	28	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	a0002	496	5	0	0	5	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	a0003	322	1	1	0	0	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	a0004	408	1	0	0	1	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	a0005	330	1	0	0	1	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	a0006	496	1	0	1	0	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK17_chr12_96273261_96405439	1/1	a0001	523	344	86	74	124	18	40	copy fasta	CDK17	chr12	96273261	96405439
CDK17_chr12_96273261_96405439	0/0	a0002	523	2	2	0	0	0	0	copy fasta	CDK17	chr12	96273261	96405439
CDK18_chr1_205499669_205537790	1/1	a0001	474	333	76	66	136	14	39	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	a0002	474	43	17	10	9	2	5	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	a0003	474	10	0	0	10	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	a0004	474	1	0	0	1	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	a0005	460	1	1	0	0	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK19_chr6_110604978_110820469	1/1	a0001	502	300	76	46	140	4	32	copy fasta	CDK19	chr6	110604978	110820469
CDK1_chr10_60773478_60799852	1/1	a0001	297	458	92	82	216	18	48	copy fasta	CDK1	chr10	60773478	60799852
CDK20_chr9_87961441_87979533	1/1	a0001	346	433	92	70	213	14	42	copy fasta	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	a0002	346	2	2	0	0	0	0	copy fasta	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	a0003	346	2	2	0	0	0	0	copy fasta	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	a0004	346	1	0	0	1	0	0	copy fasta	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	a0005	346	1	0	0	1	0	0	copy fasta	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	a0006	346	1	0	0	1	0	0	copy fasta	CDK20	chr9	87961441	87979533
CDK2AP1_chr12_123255976_123276856	1/1	a0001	115	328	90	62	116	18	40	copy fasta	CDK2AP1	chr12	123255976	123276856
CDK2AP2_chr11_67501497_67513162	1/1	a0001	126	316	92	60	110	18	34	copy fasta	CDK2AP2	chr11	67501497	67513162
CDK2_chr12_55961830_55977789	1/1	a0001	298	410	98	86	164	18	42	copy fasta	CDK2	chr12	55961830	55977789
CDK3_chr17_75995855_76010998	1/1	a0001	305	382	96	80	148	16	40	copy fasta	CDK3	chr17	75995855	76010998
CDK3_chr17_75995855_76010998	0/0	a0002	305	6	0	0	6	0	0	copy fasta	CDK3	chr17	75995855	76010998
CDK3_chr17_75995855_76010998	0/0	a0003	305	2	0	0	0	0	2	copy fasta	CDK3	chr17	75995855	76010998
CDK4_chr12_57742727_57757310	1/1	a0001	303	364	90	74	138	18	42	copy fasta	CDK4	chr12	57742727	57757310
CDK5R1_chr17_32481993_32496253	1/1	a0001	307	404	96	82	164	10	50	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	a0002	307	2	0	0	2	0	0	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R2_chr2_218954666_218967155	1/1	a0001	367	386	96	59	181	6	42	copy fasta	CDK5R2	chr2	218954666	218967155
CDK5R2_chr2_218954666_218967155	0/0	a0002	367	1	0	1	0	0	0	copy fasta	CDK5R2	chr2	218954666	218967155
CDK5R2_chr2_218954666_218967155	0/0	a0003	367	1	0	0	1	0	0	copy fasta	CDK5R2	chr2	218954666	218967155
CDK5RAP1_chr20_33353839_33406519	1/1	a0001	587	343	81	57	152	12	39	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	a0002	587	6	5	1	0	0	0	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	a0003	587	2	0	2	0	0	0	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	a0004	587	1	0	0	1	0	0	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	a0005	587	1	0	0	1	0	0	copy fasta	CDK5RAP1	chr20	33353839	33406519