JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CDK5RAP1_chr20_33353839_33406519	0/0	a0006	587	1	0	0	0	0	1	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	a0007	587	1	1	0	0	0	0	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	a0008	587	1	1	0	0	0	0	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	a0009	587	1	0	0	1	0	0	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	a0010	587	1	0	0	1	0	0	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP2_chr9_120383875_120585167	0/0	a0001	1893	108	24	25	46	3	10	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	a0002	1893	42	2	8	30	0	2	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	a0003	1893	28	17	2	9	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	a0004	1893	11	2	0	9	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	1/0	a0005	1893	7	2	2	0	1	1	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	a0006	1893	7	6	1	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	a0007	1893	7	5	2	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	a0008	1893	4	4	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	a0009	1893	3	3	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	a0010	1893	1	1	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	a0011	1893	1	1	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	a0012	1893	1	1	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	a0013	1893	1	0	0	1	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	a0014	1893	1	1	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	a0015	1893	1	0	0	1	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	a0016	1893	1	1	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	a0017	1893	1	1	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	a0018	1893	1	1	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	a0019	1893	1	1	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	a0020	1893	1	1	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	a0021	1893	1	0	0	1	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/1	a0022	1893	1	0	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	a0023	1893	1	0	0	0	0	1	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	a0024	1893	1	0	0	1	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP3_chr17_47966113_47986781	1/1	a0001	506	369	75	74	162	14	42	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	a0002	506	9	9	0	0	0	0	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	a0003	506	5	1	1	1	1	1	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	a0004	506	3	3	0	0	0	0	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	a0005	506	2	0	2	0	0	0	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	a0006	506	2	2	0	0	0	0	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	a0007	506	1	0	0	0	1	0	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	a0008	506	1	0	1	0	0	0	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	a0009	506	1	0	0	0	0	1	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	a0010	506	1	0	0	1	0	0	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5_chr7_151048815_151062897	1/1	a0001	292	416	96	70	186	18	44	copy fasta	CDK5	chr7	151048815	151062897
CDK6_chr7_92599921_92841573	1/1	a0001	326	123	62	14	32	0	13	copy fasta	CDK6	chr7	92599921	92841573
CDK6_chr7_92599921_92841573	0/0	a0002	326	1	0	0	0	0	1	copy fasta	CDK6	chr7	92599921	92841573
CDK7_chr5_69229886_69282430	0/1	a0001	346	373	90	72	164	6	40	copy fasta	CDK7	chr5	69229886	69282430
CDK7_chr5_69229886_69282430	0/0	a0002	346	1	0	0	1	0	0	copy fasta	CDK7	chr5	69229886	69282430
CDK7_chr5_69229886_69282430	0/0	a0003	346	1	0	0	1	0	0	copy fasta	CDK7	chr5	69229886	69282430
CDK8_chr13_26249129_26410238	1/1	a0001	464	328	92	58	128	14	34	copy fasta	CDK8	chr13	26249129	26410238
CDK9_chr9_127781034_127795792	1/1	a0001	372	412	94	78	182	12	44	copy fasta	CDK9	chr9	127781034	127795792
CDKAL1_chr6_20529457_21237404	1/1	a0001	579	170	62	36	46	13	11	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	a0002	579	23	5	2	9	1	6	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	a0003	579	1	0	0	1	0	0	copy fasta	CDKAL1	chr6	20529457	21237404