JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CDKAL1_chr6_20529457_21237404	0/0	a0004	579	1	1	0	0	0	0	copy fasta	CDKAL1	chr6	20529457	21237404
CDKAL1_chr6_20529457_21237404	0/0	a0005	579	1	0	0	0	0	1	copy fasta	CDKAL1	chr6	20529457	21237404
CDKL1_chr14_50321265_50401881	0/1	a0001	357	178	51	41	62	7	16	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	1/0	a0002	357	116	26	26	36	8	19	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	a0003	357	5	1	3	0	1	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	a0004	357	3	3	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	a0005	357	2	2	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	a0006	357	1	1	0	0	0	0	copy fasta	CDKL1	chr14	50321265	50401881
CDKL1_chr14_50321265_50401881	0/0	a0007	163	1	0	0	0	0	1	copy fasta	CDKL1	chr14	50321265	50401881
CDKL2_chr4_75571496_75635528	1/1	a0001	570	301	86	66	91	16	40	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	a0002	570	3	0	0	3	0	0	copy fasta	CDKL2	chr4	75571496	75635528
CDKL2_chr4_75571496_75635528	0/0	a0003	570	2	2	0	0	0	0	copy fasta	CDKL2	chr4	75571496	75635528
CDKL3_chr5_134293424_134372171	1/1	a0001	592	206	76	51	49	11	17	copy fasta	CDKL3	chr5	134293424	134372171
CDKL3_chr5_134293424_134372171	0/0	a0002	592	1	0	0	0	1	0	copy fasta	CDKL3	chr5	134293424	134372171
CDKL3_chr5_134293424_134372171	0/0	a0003	592	1	0	1	0	0	0	copy fasta	CDKL3	chr5	134293424	134372171
CDKL3_chr5_134293424_134372171	0/0	a0004	592	1	0	0	0	0	1	copy fasta	CDKL3	chr5	134293424	134372171
CDKL3_chr5_134293424_134372171	0/0	a0005	592	1	0	0	1	0	0	copy fasta	CDKL3	chr5	134293424	134372171
CDKL4_chr2_39170646_39248970	1/1	a0001	342	283	85	54	101	9	32	copy fasta	CDKL4	chr2	39170646	39248970
CDKL4_chr2_39170646_39248970	0/0	a0002	342	3	3	0	0	0	0	copy fasta	CDKL4	chr2	39170646	39248970
CDKL4_chr2_39170646_39248970	0/0	a0003	342	1	0	0	0	1	0	copy fasta	CDKL4	chr2	39170646	39248970
CDKL4_chr2_39170646_39248970	0/0	a0004	342	1	0	0	1	0	0	copy fasta	CDKL4	chr2	39170646	39248970
CDKL4_chr2_39170646_39248970	0/0	a0005	342	1	0	0	1	0	0	copy fasta	CDKL4	chr2	39170646	39248970
CDKL4_chr2_39170646_39248970	0/0	a0006	342	1	0	0	1	0	0	copy fasta	CDKL4	chr2	39170646	39248970
CDKL5_chrX_18420608_18645196	1/1	a0001	960	189	49	30	81	7	20	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	a0002	960	1	0	1	0	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	a0003	861	1	0	0	1	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKL5_chrX_18420608_18645196	0/0	a0004	158	1	0	0	1	0	0	copy fasta	CDKL5	chrX	18420608	18645196
CDKN1A_chr6_36673714_36692332	1/1	a0001	164	296	62	63	117	14	38	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	a0002	164	154	30	19	96	2	7	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	a0003	164	2	0	0	1	0	1	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	a0004	164	1	1	0	0	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1A_chr6_36673714_36692332	0/0	a0005	164	1	1	0	0	0	0	copy fasta	CDKN1A	chr6	36673714	36692332
CDKN1B_chr12_12712368_12727369	1/1	a0001	198	322	17	58	203	12	30	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	a0002	198	114	72	14	12	4	12	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	a0003	198	3	3	0	0	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	a0004	198	1	0	0	1	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	a0005	198	1	0	0	1	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1B_chr12_12712368_12727369	0/0	a0006	198	1	0	0	1	0	0	copy fasta	CDKN1B	chr12	12712368	12727369
CDKN1C_chr11_2878218_2890775	0/1	a0001	305	352	96	51	150	16	38	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	a0002	301	48	2	22	19	2	3	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	a0003	303	3	0	3	0	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	a0004	301	3	0	1	2	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	a0005	297	3	0	2	0	0	1	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	a0006	305	1	1	0	0	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	a0007	305	1	0	0	1	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	a0008	305	1	0	0	1	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	a0009	299	1	0	0	1	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	a0010	305	1	0	0	1	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	a0011	305	1	0	0	1	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN1C_chr11_2878218_2890775	0/0	a0012	299	1	0	1	0	0	0	copy fasta	CDKN1C	chr11	2878218	2890775