Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ACTR3_chr2_113885089_113967596	0/0	a0002	418	1	1	0	0	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR5_chr20_38743460_38777520	1/1	a0001	607	177	24	36	87	10	18	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	a0002	607	171	46	23	75	7	20	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	a0003	607	4	4	0	0	0	0	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	a0004	607	3	0	1	2	0	0	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	a0005	607	3	0	0	0	1	2	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	a0006	607	3	0	0	3	0	0	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	a0007	607	2	2	0	0	0	0	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	a0008	607	1	0	1	0	0	0	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	a0009	607	1	0	1	0	0	0	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	a0010	607	1	0	0	1	0	0	copy fasta	ACTR5	chr20	38743460	38777520
ACTR6_chr12_100195815_100229424	1/1	a0001	396	241	89	42	74	10	24	copy fasta	ACTR6	chr12	100195815	100229424
ACTR6_chr12_100195815_100229424	0/0	a0002	396	1	1	0	0	0	0	copy fasta	ACTR6	chr12	100195815	100229424
ACTR8_chr3_53862066_53887152	1/1	a0001	624	360	81	57	173	11	36	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	a0002	624	68	12	14	37	1	4	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	a0003	624	3	0	3	0	0	0	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	a0004	624	1	1	0	0	0	0	copy fasta	ACTR8	chr3	53862066	53887152
ACTRT1_chrX_128045962_128057403	1/1	a0001	376	269	66	52	117	8	24	copy fasta	ACTRT1	chrX	128045962	128057403
ACTRT1_chrX_128045962_128057403	0/0	a0002	376	5	4	1	0	0	0	copy fasta	ACTRT1	chrX	128045962	128057403
ACTRT1_chrX_128045962_128057403	0/0	a0003	376	3	0	1	1	0	1	copy fasta	ACTRT1	chrX	128045962	128057403
ACTRT1_chrX_128045962_128057403	0/0	a0004	376	3	0	3	0	0	0	copy fasta	ACTRT1	chrX	128045962	128057403
ACTRT1_chrX_128045962_128057403	0/0	a0005	376	1	0	0	1	0	0	copy fasta	ACTRT1	chrX	128045962	128057403
ACTRT1_chrX_128045962_128057403	0/0	a0006	376	1	0	0	1	0	0	copy fasta	ACTRT1	chrX	128045962	128057403
ACTRT1_chrX_128045962_128057403	0/0	a0007	376	1	1	0	0	0	0	copy fasta	ACTRT1	chrX	128045962	128057403
ACTRT1_chrX_128045962_128057403	0/0	a0008	376	1	0	0	1	0	0	copy fasta	ACTRT1	chrX	128045962	128057403
ACTRT1_chrX_128045962_128057403	0/0	a0009	210	1	1	0	0	0	0	copy fasta	ACTRT1	chrX	128045962	128057403
ACTRT2_chr1_3016467_3027903	1/1	a0001	377	244	73	49	84	8	28	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	a0002	376	59	1	19	35	3	1	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	a0003	377	42	0	6	29	3	4	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	a0004	377	11	10	1	0	0	0	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	a0005	377	7	4	3	0	0	0	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	a0006	377	1	0	0	0	0	1	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	a0007	377	1	1	0	0	0	0	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	a0008	377	1	1	0	0	0	0	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT3_chr3_169761921_169774561	1/1	a0001	372	362	66	70	171	14	39	copy fasta	ACTRT3	chr3	169761921	169774561
ACTRT3_chr3_169761921_169774561	0/0	a0002	372	32	14	2	14	0	2	copy fasta	ACTRT3	chr3	169761921	169774561
ACTRT3_chr3_169761921_169774561	0/0	a0003	372	16	13	2	0	0	1	copy fasta	ACTRT3	chr3	169761921	169774561
ACTRT3_chr3_169761921_169774561	0/0	a0004	372	2	0	0	0	0	2	copy fasta	ACTRT3	chr3	169761921	169774561
ACTRT3_chr3_169761921_169774561	0/0	a0005	372	2	0	2	0	0	0	copy fasta	ACTRT3	chr3	169761921	169774561
ACTRT3_chr3_169761921_169774561	0/0	a0006	372	1	1	0	0	0	0	copy fasta	ACTRT3	chr3	169761921	169774561
ACTRT3_chr3_169761921_169774561	0/0	a0007	261	1	0	0	1	0	0	copy fasta	ACTRT3	chr3	169761921	169774561
ACTRT3_chr3_169761921_169774561	0/0	a0008	372	1	0	0	1	0	0	copy fasta	ACTRT3	chr3	169761921	169774561
ACTRT3_chr3_169761921_169774561	0/0	a0009	372	1	0	0	1	0	0	copy fasta	ACTRT3	chr3	169761921	169774561
ACVR1B_chr12_51946699_52002078	1/1	a0001	505	323	89	58	134	10	30	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	a0002	505	1	1	0	0	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1C_chr2_157521767_157633864	1/1	a0001	493	152	41	27	48	14	20	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	a0002	493	62	49	13	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	a0003	493	2	0	0	0	2	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1_chr2_157731446_157881330	1/1	a0001	509	174	78	18	50	6	20	copy fasta	ACVR1	chr2	157731446	157881330
ACVR2A_chr2_147840029_147935822	1/1	a0001	513	336	72	64	144	14	40	copy fasta	ACVR2A	chr2	147840029	147935822