JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CDKN1C_chr11_2878218_2890775	0/0	a0013	293	1	1	0	0	0	0	copy fasta	CDKN1C	chr11	2878218	2890775
CDKN2AIPNL_chr5_134397065_134416881	1/1	a0001	116	379	86	62	167	18	44	copy fasta	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIPNL_chr5_134397065_134416881	0/0	a0002	116	1	0	0	1	0	0	copy fasta	CDKN2AIPNL	chr5	134397065	134416881
CDKN2AIP_chr4_183439636_183454064	1/0	a0001	580	321	80	51	160	4	25	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/1	a0002	579	143	14	30	63	10	25	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	a0003	580	1	0	0	1	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	a0004	580	1	1	0	0	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	a0005	580	1	1	0	0	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	a0006	580	1	0	1	0	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	a0007	580	1	0	1	0	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2AIP_chr4_183439636_183454064	0/0	a0008	579	1	0	1	0	0	0	copy fasta	CDKN2AIP	chr4	183439636	183454064
CDKN2A_chr9_21962752_21979857	1/1	a0001	156	409	91	73	181	14	48	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	a0002	156	2	2	0	0	0	0	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	a0003	156	1	0	1	0	0	0	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	a0004	156	1	0	0	1	0	0	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	a0005	156	1	0	1	0	0	0	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	a0006	156	1	1	0	0	0	0	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21979857	0/0	a0007	156	1	0	1	0	0	0	copy fasta	CDKN2A	chr9	21962752	21979857
CDKN2A_chr9_21962752_21999392	1/1	a0001	132	403	94	77	164	16	50	copy fasta	CDKN2A	chr9	21962752	21999392
CDKN2A_chr9_21962752_21999392	0/0	a0002	132	1	0	1	0	0	0	copy fasta	CDKN2A	chr9	21962752	21999392
CDKN2B_chr9_21997903_22014305	1/1	a0001	138	416	98	76	176	18	46	copy fasta	CDKN2B	chr9	21997903	22014305
CDKN2C_chr1_50965245_50979634	0/0	a0001	168	335	93	70	124	14	34	copy fasta	CDKN2C	chr1	50965245	50979634
CDKN2C_chr1_50965245_50979634	0/0	a0002	168	1	1	0	0	0	0	copy fasta	CDKN2C	chr1	50965245	50979634
CDKN2D_chr19_10561460_10573979	1/1	a0001	166	410	86	72	188	16	46	copy fasta	CDKN2D	chr19	10561460	10573979
CDKN3_chr14_54392007_54425218	1/1	a0001	212	417	98	69	190	16	42	copy fasta	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	a0002	212	1	0	0	1	0	0	copy fasta	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	a0003	212	1	0	0	1	0	0	copy fasta	CDKN3	chr14	54392007	54425218
CDKN3_chr14_54392007_54425218	0/0	a0004	212	1	0	1	0	0	0	copy fasta	CDKN3	chr14	54392007	54425218
CDNF_chr10_14814245_14843037	1/1	a0001	187	409	96	69	188	13	41	copy fasta	CDNF	chr10	14814245	14843037
CDNF_chr10_14814245_14843037	0/0	a0002	187	9	0	5	0	1	3	copy fasta	CDNF	chr10	14814245	14843037
CDO1_chr5_115799733_115821659	1/1	a0001	200	370	92	76	144	14	42	copy fasta	CDO1	chr5	115799733	115821659
CDO1_chr5_115799733_115821659	0/0	a0002	40	1	1	0	0	0	0	copy fasta	CDO1	chr5	115799733	115821659
CDO1_chr5_115799733_115821659	0/0	a0003	200	1	1	0	0	0	0	copy fasta	CDO1	chr5	115799733	115821659
CDON_chr11_125951821_126067866	0/0	a0001	1264	103	6	18	63	3	13	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/1	a0002	1264	100	30	21	34	2	12	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0003	1264	18	1	7	8	0	2	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0004	1264	18	2	5	7	1	3	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0005	1264	16	9	3	0	0	4	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	1/0	a0006	1264	12	2	3	1	2	3	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0007	1264	11	9	2	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0008	1264	11	2	4	0	1	4	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0009	1264	8	7	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0010	1264	5	1	1	3	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0011	1264	4	3	0	0	0	1	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0012	1264	3	3	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0013	1264	3	0	2	1	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0014	1264	2	2	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0015	1264	2	2	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0016	1264	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0017	1264	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866