JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CDON_chr11_125951821_126067866	0/0	a0018	1264	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0019	1264	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0020	1264	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0021	1264	1	0	0	1	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0022	1264	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0023	1264	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0024	1264	1	0	0	0	0	1	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0025	1264	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0026	1264	1	0	0	1	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0027	1264	1	0	1	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0028	1264	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0029	1264	1	0	0	0	1	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0030	1264	1	0	0	0	0	1	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0031	1264	1	0	0	1	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0032	1264	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDON_chr11_125951821_126067866	0/0	a0033	1264	1	1	0	0	0	0	copy fasta	CDON	chr11	125951821	126067866
CDPF1_chr22_46239013_46255293	1/0	a0001	123	177	19	48	68	10	31	copy fasta	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	a0002	123	51	37	10	0	1	3	copy fasta	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	a0003	123	31	24	3	0	0	4	copy fasta	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/1	a0004	123	19	16	1	0	1	0	copy fasta	CDPF1	chr22	46239013	46255293
CDPF1_chr22_46239013_46255293	0/0	a0005	123	2	2	0	0	0	0	copy fasta	CDPF1	chr22	46239013	46255293
CDR2L_chr17_74982632_75010800	1/1	a0001	465	329	76	62	138	12	39	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	a0002	465	21	17	3	0	0	1	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	a0003	465	1	1	0	0	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2L_chr17_74982632_75010800	0/0	a0004	465	1	0	1	0	0	0	copy fasta	CDR2L	chr17	74982632	75010800
CDR2_chr16_22340936_22379619	1/1	a0001	454	308	90	52	110	14	40	copy fasta	CDR2	chr16	22340936	22379619
CDR2_chr16_22340936_22379619	0/0	a0002	454	2	0	0	0	0	2	copy fasta	CDR2	chr16	22340936	22379619
CDRT15L2_chr17_20574724_20585911	1/1	a0001	281	368	72	75	162	14	43	copy fasta	CDRT15L2	chr17	20574724	20585911
CDRT15L2_chr17_20574724_20585911	0/0	a0002	281	12	0	0	11	0	1	copy fasta	CDRT15L2	chr17	20574724	20585911
CDRT15L2_chr17_20574724_20585911	0/0	a0003	281	11	11	0	0	0	0	copy fasta	CDRT15L2	chr17	20574724	20585911
CDRT15L2_chr17_20574724_20585911	0/0	a0004	281	2	2	0	0	0	0	copy fasta	CDRT15L2	chr17	20574724	20585911
CDRT15L2_chr17_20574724_20585911	0/0	a0005	281	1	0	1	0	0	0	copy fasta	CDRT15L2	chr17	20574724	20585911
CDRT15L2_chr17_20574724_20585911	0/0	a0006	281	1	0	0	1	0	0	copy fasta	CDRT15L2	chr17	20574724	20585911
CDRT15L2_chr17_20574724_20585911	0/0	a0007	281	1	1	0	0	0	0	copy fasta	CDRT15L2	chr17	20574724	20585911
CDRT15_chr17_14230673_14241862	0/1	a0001	188	402	89	57	201	16	38	copy fasta	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	a0002	188	23	0	11	7	0	5	copy fasta	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	a0003	188	20	1	8	10	0	1	copy fasta	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	1/0	a0004	188	5	3	1	0	0	0	copy fasta	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	a0005	188	4	3	1	0	0	0	copy fasta	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	a0006	188	4	0	0	4	0	0	copy fasta	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	a0007	188	2	0	0	2	0	0	copy fasta	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	a0008	188	1	1	0	0	0	0	copy fasta	CDRT15	chr17	14230673	14241862
CDRT15_chr17_14230673_14241862	0/0	a0009	188	1	1	0	0	0	0	copy fasta	CDRT15	chr17	14230673	14241862
CDRT4_chr17_15431015_15472621	1/1	a0001	152	233	52	52	90	15	22	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	a0002	152	159	23	23	92	1	20	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	a0003	152	16	2	4	10	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	a0004	151	15	14	1	0	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	a0005	152	4	2	2	0	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	a0006	152	1	1	0	0	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDRT4_chr17_15431015_15472621	0/0	a0007	152	1	1	0	0	0	0	copy fasta	CDRT4	chr17	15431015	15472621