JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CDRT4_chr17_15431015_15472621	0/0	a0008	152	1	1	0	0	0	0	copy fasta	CDRT4	chr17	15431015	15472621
CDS1_chr4_84578127_84656334	1/1	a0001	461	370	83	64	170	11	40	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	a0002	461	10	3	2	0	1	4	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	a0003	461	1	0	0	1	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	a0004	461	1	0	0	1	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	a0005	461	1	1	0	0	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS1_chr4_84578127_84656334	0/0	a0006	461	1	1	0	0	0	0	copy fasta	CDS1	chr4	84578127	84656334
CDS2_chr20_5122008_5202887	1/1	a0001	445	348	98	60	134	14	40	copy fasta	CDS2	chr20	5122008	5202887
CDSN_chr6_31110087_31125446	0/0	a0001	529	121	32	26	50	7	6	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	a0002	529	81	8	21	39	4	9	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/1	a0003	529	65	15	2	34	1	12	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	1/0	a0004	529	64	5	19	34	2	3	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	a0005	528	27	7	7	6	3	4	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	a0006	528	25	0	0	20	0	5	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	a0007	528	25	11	1	13	0	0	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	a0008	529	14	11	2	0	0	1	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	a0009	528	11	0	1	10	0	0	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	a0010	529	4	0	1	1	1	1	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	a0011	528	3	0	0	0	0	3	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	a0012	528	2	0	0	0	0	2	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	a0013	528	1	1	0	0	0	0	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	a0014	529	1	0	0	1	0	0	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	a0015	529	1	1	0	0	0	0	copy fasta	CDSN	chr6	31110087	31125446
CDSN_chr6_31110087_31125446	0/0	a0016	529	1	1	0	0	0	0	copy fasta	CDSN	chr6	31110087	31125446
CDT1_chr16_88798789_88814258	0/0	a0001	546	253	55	38	135	7	18	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	a0002	546	162	24	43	61	11	23	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	a0003	546	7	0	0	7	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	a0004	546	4	4	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	a0005	546	4	4	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	a0006	546	2	2	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	a0007	546	1	1	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	a0008	546	1	0	1	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	a0009	546	1	1	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	a0010	546	1	0	1	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	1/0	a0011	546	1	0	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	a0012	546	1	0	1	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	a0013	546	1	0	1	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	a0014	546	1	0	0	0	0	1	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	a0015	546	1	1	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/1	a0016	546	1	0	0	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	a0017	546	1	0	1	0	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDT1_chr16_88798789_88814258	0/0	a0018	546	1	0	0	1	0	0	copy fasta	CDT1	chr16	88798789	88814258
CDV3_chr3_133568686_133595261	1/1	a0001	258	377	85	81	151	18	40	copy fasta	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	a0002	258	8	7	1	0	0	0	copy fasta	CDV3	chr3	133568686	133595261
CDV3_chr3_133568686_133595261	0/0	a0003	258	1	0	0	1	0	0	copy fasta	CDV3	chr3	133568686	133595261
CDX1_chr5_150161778_150189558	0/1	a0001	265	236	74	31	95	8	27	copy fasta	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	1/0	a0002	265	170	24	44	78	10	13	copy fasta	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	a0003	265	4	0	0	0	0	4	copy fasta	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	a0004	265	4	0	0	4	0	0	copy fasta	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	a0005	265	2	0	1	0	0	1	copy fasta	CDX1	chr5	150161778	150189558