JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CDX1_chr5_150161778_150189558	0/0	a0006	265	1	0	0	1	0	0	copy fasta	CDX1	chr5	150161778	150189558
CDX1_chr5_150161778_150189558	0/0	a0007	265	1	0	0	0	0	1	copy fasta	CDX1	chr5	150161778	150189558
CDX2_chr13_27955918_27974315	0/1	a0001	313	312	46	58	159	16	32	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	1/0	a0002	313	81	22	17	33	2	6	copy fasta	CDX2	chr13	27955918	27974315
CDX2_chr13_27955918_27974315	0/0	a0003	313	25	24	1	0	0	0	copy fasta	CDX2	chr13	27955918	27974315
CDX4_chrX_73442053_73460171	1/1	a0001	284	287	81	49	114	11	30	copy fasta	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	a0002	284	1	1	0	0	0	0	copy fasta	CDX4	chrX	73442053	73460171
CDX4_chrX_73442053_73460171	0/0	a0003	284	1	0	0	1	0	0	copy fasta	CDX4	chrX	73442053	73460171
CDY1B_chrY_24040793_24053019	0/0	a0001	540	50	0	14	25	3	8	copy fasta	CDY1B	chrY	24040793	24053019
CDY1B_chrY_24040793_24053019	0/0	a0002	540	1	0	1	0	0	0	copy fasta	CDY1B	chrY	24040793	24053019
CDY1_chrY_25617117_25629902	0/0	a0001	554	89	11	17	46	4	11	copy fasta	CDY1	chrY	25617117	25629902
CDY1_chrY_25617117_25629902	0/0	a0002	554	1	0	0	0	1	0	copy fasta	CDY1	chrY	25617117	25629902
CDY1_chrY_25617117_25629902	0/0	a0003	396	1	0	0	1	0	0	copy fasta	CDY1	chrY	25617117	25629902
CDY1_chrY_25617117_25629902	0/0	a0004	64	1	0	0	1	0	0	copy fasta	CDY1	chrY	25617117	25629902
CDY2A_chrY_18020787_18032746	0/0	a0001	541	63	9	15	22	3	14	copy fasta	CDY2A	chrY	18020787	18032746
CDY2A_chrY_18020787_18032746	0/0	a0002	541	2	0	1	0	1	0	copy fasta	CDY2A	chrY	18020787	18032746
CDY2A_chrY_18020787_18032746	0/0	a0003	541	1	0	0	0	0	1	copy fasta	CDY2A	chrY	18020787	18032746
CDY2A_chrY_18020787_18032746	0/0	a0004	541	1	0	1	0	0	0	copy fasta	CDY2A	chrY	18020787	18032746
CDY2B_chrY_17873260_17885220	0/0	a0001	541	52	5	18	12	3	14	copy fasta	CDY2B	chrY	17873260	17885220
CDY2B_chrY_17873260_17885220	0/0	a0002	541	1	0	0	0	0	1	copy fasta	CDY2B	chrY	17873260	17885220
CDYL2_chr16_80592907_80809598	1/1	a0001	506	256	84	53	84	8	25	copy fasta	CDYL2	chr16	80592907	80809598
CDYL2_chr16_80592907_80809598	0/0	a0002	506	2	0	1	0	0	1	copy fasta	CDYL2	chr16	80592907	80809598
CDYL_chr6_4771404_4960544	1/1	a0001	544	250	86	42	76	8	36	copy fasta	CDYL	chr6	4771404	4960544
CEACAM16_chr19_44694151_44715718	1/1	a0001	425	432	96	83	189	18	44	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	a0002	425	4	4	0	0	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	a0003	425	2	0	2	0	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	a0004	425	2	0	0	2	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	a0005	425	2	0	0	2	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	a0006	425	2	0	0	2	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	a0007	7	1	0	0	1	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	a0008	425	1	0	0	1	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	a0009	425	1	0	0	1	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	a0010	425	1	0	0	1	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	a0011	425	1	0	0	1	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM16_chr19_44694151_44715718	0/0	a0012	425	1	0	1	0	0	0	copy fasta	CEACAM16	chr19	44694151	44715718
CEACAM18_chr19_51473539_51496301	0/1	a0001	384	219	66	44	75	7	26	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	a0002	384	79	0	6	70	0	3	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	1/0	a0003	384	38	2	11	15	5	4	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	a0004	384	26	1	5	12	4	4	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	a0005	384	11	5	3	0	2	1	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	a0006	384	8	8	0	0	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	a0007	384	8	1	4	1	0	2	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	a0008	384	7	0	0	7	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	a0009	384	6	0	5	0	0	1	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	a0010	384	4	3	0	0	0	1	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	a0011	384	4	4	0	0	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	a0012	384	4	0	0	4	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	a0013	384	3	0	0	0	0	3	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	a0014	384	1	0	0	0	0	1	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM18_chr19_51473539_51496301	0/0	a0015	384	1	0	1	0	0	0	copy fasta	CEACAM18	chr19	51473539	51496301