Joint Open Genome and Omics Platform (JoGo)

Search by Genic region

Item	Value
geneid	9085
ensemblid	ENSG00000172288.8
hgncid	1809
symbol	CDY1
name	chromodomain Y-linked 1
refseq_nuc	NM_004680.3
refseq_prot	NP_004671.1
ensembl_nuc	ENST00000306609.5
ensembl_prot	ENSP00000302968.4
mane_status	MANE Select
chr	chrY
start	25622117
end	25624902
strand	+
ver	v1.2
region	chrY:25622117-25624902
region5000	chrY:25617117-25629902
regionname0	CDY1_chrY_25622117_25624902
regionname5000	CDY1_chrY_25617117_25629902

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	554	89	11	17	46	4	11	38	CDY1_chrY_25617117_25629902	CDY1	MASQE others(549): Show MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKC VHDFNRRQTEKQKKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVT DKHHRSKNRKLFAASKNVRRKAASILSDTKNMEIINSTIETLAPDSPFDH KTVSGFQKLEKLDPIAADQQDTVVFKVTEGKLLRDPLSRPGAEQTGIQNK TQIHPLMSQMSGSVTASMATGSATRKGIVVLIDPLAANGTTDMHTSVPRV KGGQRNITDDSRDQPFIKKMHFTIRLTESASTYRDIVVKKEDGFTQIVLS TRSTEKNALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYF VKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILP LCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRK LTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNPIVLEECKALVRCN IKLELEQANERECEVLRKIWSSAQGIESMLKIPLLGYKAAFPPRKTQNDQ RWCP	chrY	25617117	25629902
a0002	0/0	554	1	0	0	0	1	0	0	CDY1_chrY_25617117_25629902	CDY1	MASQE others(549): Show MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKC VHDFNRRQTEKQKKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVT DKHHRSKNRKLFAASKNVRRKAASILSDTKNMEIINSTIETLAPDSPFDH KTVSGFQKLEKLDPIAADQQDTVVFKVTEGKLLRDPLSRPGAEQTGIQNK TQIHPLMSQMSGSVTASMATGSATRKGIVVLIDPLAANGTTDMHTSVPRV KGGQRNITDDSRDQPFIKKMHFTIRLTESASTYRDIVVKKEDGFTQIVLS TRSTEKNALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYF VKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILP LCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRK LTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNPIVLEECKALIRCN IKLELEQANERECEVLRKIWSSAQGIESMLKIPLLGYKAAFPPRKTQNDQ RWCP	chrY	25617117	25629902
a0003	0/0	396	1	0	0	1	0	0	1	CDY1_chrY_25617117_25629902	CDY1	MASQE others(391): Show MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKC VHDFNRRQTEKQKKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVT DKHHRSKNRKLFAASKNVRRKAASILSDTKNMEIINSTIETLAPDSPFDH KTVSGFQKLEKLDPIAADQQDTVVFKVTEGKLLRDPLSRPGAEQTGIQNK TQIHPLMSQMSGSVTASMATGSATRKGIVVLIDPLAANGTTDMHTSVPRV KGGQRNITDDSRDQPFIKKMHFTIRLTESASTYRDIVVKKEDGFTQIVLS TRSTEKNALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYF VKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGL	chrY	25617117	25629902
a0004	0/0	64	1	0	0	1	0	0	1	CDY1_chrY_25617117_25629902	CDY1	MASQE others(59): Show MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKC VHDFNRRQTEKQKN	chrY	25617117	25629902

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	1662	81	11	12	46	3	9	CDY1_chrY_25617117_25629902	CDY1	ATGGC others(1657): Show ATGGCTTCCCAGGAGTTTGAGGTTGAAGCTATTGTTGACAAAAGACAGGA TAAAAATGGGAATACACAGTATTTGGTTCGGTGGAAAGGTTATGACAAAC AGGATGACACTTGGGAACCAGAGCAGCACCTCATGAACTGTGAAAAATGT GTACATGATTTTAATAGACGACAGACTGAAAAACAGAAAAAACTGACATG GACTACAACCAGTAGAATTTTTTCAAACAATGCCAGAAGAAGAACTTCCA GATCTACAAAAGCAAACTATTCTAAGAACTCTCCTAAAACGCCAGTGACT GATAAACACCACAGGTCCAAAAACCGCAAGTTATTTGCTGCCAGCAAGAA CGTTAGGAGAAAGGCAGCTTCAATTCTCTCCGACACAAAGAATATGGAGA TAATAAATTCAACTATTGAGACCCTTGCACCTGACAGCCCCTTTGACCAC AAAACTGTGAGTGGCTTTCAGAAACTTGAGAAACTGGACCCTATTGCAGC AGATCAGCAGGACACGGTGGTCTTCAAGGTGACAGAAGGGAAACTCCTCC GGGACCCTTTGTCACGTCCTGGTGCAGAACAGACTGGAATACAGAACAAG ACTCAGATACACCCACTAATGTCGCAGATGTCTGGCTCAGTTACTGCTTC TATGGCCACAGGTTCAGCTACCCGAAAGGGTATAGTGGTATTAATAGACC CATTAGCAGCCAATGGGACAACAGACATGCATACCTCAGTTCCAAGAGTG AAAGGTGGGCAAAGAAATATTACTGATGACAGCAGAGACCAGCCTTTTAT CAAGAAGATGCACTTCACCATAAGGCTAACAGAAAGTGCCAGCACATACA GAGACATTGTAGTGAAGAAAGAGGATGGATTCACCCAGATAGTGCTATCA ACTAGATCGACAGAAAAAAATGCACTGAATACAGAAGTAATTAAAGAAAT AGTTAATGCTCTGAATAGCGCTGCTGCAGATGACAGCAAGCTCGTGCTGT TCAGTGCAGCTGGAAGTGTCTTTTGCTGCGGTCTTGATTTTGGGTACTTT GTGAAGCACTTAAGGAATAACAGAAACACAGCAAGCCTTGAAATGGTGGA CACCATCAAGAACTTTGTGAATACTTTTATTCAATTTAAAAAGCCTATTG TTGTATCAGTCAATGGCCCTGCGATTGGACTAGGTGCATCCATCCTGCCT CTTTGTGATCTCGTGTGGGCTAATGAAAAGGCTTGGTTCCAAACCCCTTA TACGACCTTTGGACAGAGTCCAGATGGCTGTTCTTCTATTACATTCCCCA AAATGATGGGTAAAGCATCTGCCAATGAAATGTTAATTGCTGGGCGAAAG CTGACAGCAAGGGAGGCATGCGCCAAAGGCCTGGTCTCTCAGGTATTTTT GACTGGAACTTTCACCCAAGAGGTTATGATTCAAATTAAGGAGCTTGCCT CATACAATCCAATTGTACTGGAAGAATGTAAGGCCCTCGTTCGCTGTAAT ATTAAGTTGGAGTTGGAACAGGCCAATGAGAGAGAGTGTGAGGTGCTGAG GAAGATCTGGAGCTCAGCCCAAGGGATAGAATCCATGTTAAAAATACCTC TGTTGGGATATAAAGCAGCCTTCCCTCCCAGAAAGACACAGAATGATCAG AGATGGTGCCCT	chrY	25617117	25629902
a0001c0002	0/0	1662	8	0	5	0	1	2	CDY1_chrY_25617117_25629902	CDY1	ATGGC others(1657): Show ATGGCTTCCCAGGAGTTTGAGGTTGAAGCTATTGTTGACAAAAGACAGGA TAAAAATGGGAATACACAGTATTTGGTTCGGTGGAAAGGTTATGACAAAC AGGATGACACTTGGGAACCAGAGCAGCACCTCATGAACTGTGAAAAATGT GTACATGATTTTAATAGACGACAGACTGAAAAACAGAAAAAACTGACATG GACTACAACCAGTAGAATTTTTTCAAACAATGCCAGAAGAAGAACTTCCA GATCTACAAAAGCAAACTATTCTAAGAACTCTCCTAAAACGCCAGTGACT GATAAACACCACAGGTCCAAAAACCGCAAGTTATTTGCTGCCAGCAAGAA CGTTAGGAGAAAGGCAGCTTCAATTCTCTCTGACACAAAGAATATGGAGA TAATAAATTCAACTATTGAGACCCTTGCACCTGACAGCCCCTTTGACCAC AAAACTGTGAGTGGCTTTCAGAAACTTGAGAAACTGGACCCTATTGCAGC AGATCAGCAGGACACGGTGGTCTTCAAGGTGACAGAAGGGAAACTCCTCC GGGACCCTTTGTCACGTCCTGGTGCAGAACAGACTGGAATACAGAACAAG ACTCAGATACACCCACTAATGTCGCAGATGTCTGGCTCAGTTACTGCTTC TATGGCCACAGGTTCAGCTACCCGAAAGGGTATAGTGGTATTAATAGACC CATTAGCAGCCAATGGGACAACAGACATGCATACCTCAGTTCCAAGAGTG AAAGGTGGGCAAAGAAATATTACTGATGACAGCAGAGACCAGCCTTTTAT CAAGAAGATGCACTTCACCATAAGGCTAACAGAAAGTGCCAGCACATACA GAGACATTGTAGTGAAGAAAGAGGATGGATTCACCCAGATAGTGCTATCA ACTAGATCGACAGAAAAAAATGCACTGAATACAGAAGTAATTAAAGAAAT AGTTAATGCTCTGAATAGCGCTGCTGCAGATGACAGCAAGCTCGTGCTGT TCAGTGCAGCTGGAAGTGTCTTTTGCTGCGGTCTTGATTTTGGGTACTTT GTGAAGCACTTAAGGAATAACAGAAACACAGCAAGCCTTGAAATGGTGGA CACCATCAAGAACTTTGTGAATACTTTTATTCAATTTAAAAAGCCTATTG TTGTATCAGTCAATGGCCCTGCGATTGGACTAGGTGCATCCATCCTGCCT CTTTGTGATCTCGTGTGGGCTAATGAAAAGGCTTGGTTCCAAACCCCTTA TACGACCTTTGGACAGAGTCCAGATGGCTGTTCTTCTATTACATTCCCCA AAATGATGGGTAAAGCATCTGCCAATGAAATGTTAATTGCTGGGCGAAAG CTGACAGCAAGGGAGGCATGCGCCAAAGGCCTGGTCTCTCAGGTATTTTT GACTGGAACTTTCACCCAAGAGGTTATGATTCAAATTAAGGAGCTTGCCT CATACAATCCAATTGTACTGGAAGAATGTAAGGCCCTCGTTCGCTGTAAT ATTAAGTTGGAGTTGGAACAGGCCAATGAGAGAGAGTGTGAGGTGCTGAG GAAGATCTGGAGCTCAGCCCAAGGGATAGAATCCATGTTAAAAATACCTC TGTTGGGATATAAAGCAGCCTTCCCTCCCAGAAAGACACAGAATGATCAG AGATGGTGCCCT	chrY	25617117	25629902
a0002c0003	0/0	1662	1	0	0	0	1	0	CDY1_chrY_25617117_25629902	CDY1	ATGGC others(1657): Show ATGGCTTCCCAGGAGTTTGAGGTTGAAGCTATTGTTGACAAAAGACAGGA TAAAAATGGGAATACACAGTATTTGGTTCGGTGGAAAGGTTATGACAAAC AGGATGACACTTGGGAACCAGAGCAGCACCTCATGAACTGTGAAAAATGT GTACATGATTTTAATAGACGACAGACTGAAAAACAGAAAAAACTGACATG GACTACAACCAGTAGAATTTTTTCAAACAATGCCAGAAGAAGAACTTCCA GATCTACAAAAGCAAACTATTCTAAGAACTCTCCTAAAACGCCAGTGACT GATAAACACCACAGGTCCAAAAACCGCAAGTTATTTGCTGCCAGCAAGAA CGTTAGGAGAAAGGCAGCTTCAATTCTCTCCGACACAAAGAATATGGAGA TAATAAATTCAACTATTGAGACCCTTGCACCTGACAGCCCCTTTGACCAC AAAACTGTGAGTGGCTTTCAGAAACTTGAGAAACTGGACCCTATTGCAGC AGATCAGCAGGACACGGTGGTCTTCAAGGTGACAGAAGGGAAACTCCTCC GGGACCCTTTGTCACGTCCTGGTGCAGAACAGACTGGAATACAGAACAAG ACTCAGATACACCCACTAATGTCGCAGATGTCTGGCTCAGTTACTGCTTC TATGGCCACAGGTTCAGCTACCCGAAAGGGTATAGTGGTATTAATAGACC CATTAGCAGCCAATGGGACAACAGACATGCATACCTCAGTTCCAAGAGTG AAAGGTGGGCAAAGAAATATTACTGATGACAGCAGAGACCAGCCTTTTAT CAAGAAGATGCACTTCACCATAAGGCTAACAGAAAGTGCCAGCACATACA GAGACATTGTAGTGAAGAAAGAGGATGGATTCACCCAGATAGTGCTATCA ACTAGATCGACAGAAAAAAATGCACTGAATACAGAAGTAATTAAAGAAAT AGTTAATGCTCTGAATAGCGCTGCTGCAGATGACAGCAAGCTCGTGCTGT TCAGTGCAGCTGGAAGTGTCTTTTGCTGCGGTCTTGATTTTGGGTACTTT GTGAAGCACTTAAGGAATAACAGAAACACAGCAAGCCTTGAAATGGTGGA CACCATCAAGAACTTTGTGAATACTTTTATTCAATTTAAAAAGCCTATTG TTGTATCAGTCAATGGCCCTGCGATTGGACTAGGTGCATCCATCCTGCCT CTTTGTGATCTCGTGTGGGCTAATGAAAAGGCTTGGTTCCAAACCCCTTA TACGACCTTTGGACAGAGTCCAGATGGCTGTTCTTCTATTACATTCCCCA AAATGATGGGTAAAGCATCTGCCAATGAAATGTTAATTGCTGGGCGAAAG CTGACAGCAAGGGAGGCATGCGCCAAAGGCCTGGTCTCTCAGGTATTTTT GACTGGAACTTTCACCCAAGAGGTTATGATTCAAATTAAGGAGCTTGCCT CATACAATCCAATTGTACTGGAAGAATGTAAGGCCCTCATTCGCTGTAAT ATTAAGTTGGAGTTGGAACAGGCCAATGAGAGAGAGTGTGAGGTGCTGAG GAAGATCTGGAGCTCAGCCCAAGGGATAGAATCCATGTTAAAAATACCTC TGTTGGGATATAAAGCAGCCTTCCCTCCCAGAAAGACACAGAATGATCAG AGATGGTGCCCT	chrY	25617117	25629902
a0003c0004	0/0	1645	1	0	0	1	0	0	CDY1_chrY_25617117_25629902	CDY1	ATGGC others(1640): Show ATGGCTTCCCAGGAGTTTGAGGTTGAAGCTATTGTTGACAAAAGACAGGA TAAAAATGGGAATACACAGTATTTGGTTCGGTGGAAAGGTTATGACAAAC AGGATGACACTTGGGAACCAGAGCAGCACCTCATGAACTGTGAAAAATGT GTACATGATTTTAATAGACGACAGACTGAAAAACAGAAAAAACTGACATG GACTACAACCAGTAGAATTTTTTCAAACAATGCCAGAAGAAGAACTTCCA GATCTACAAAAGCAAACTATTCTAAGAACTCTCCTAAAACGCCAGTGACT GATAAACACCACAGGTCCAAAAACCGCAAGTTATTTGCTGCCAGCAAGAA CGTTAGGAGAAAGGCAGCTTCAATTCTCTCCGACACAAAGAATATGGAGA TAATAAATTCAACTATTGAGACCCTTGCACCTGACAGCCCCTTTGACCAC AAAACTGTGAGTGGCTTTCAGAAACTTGAGAAACTGGACCCTATTGCAGC AGATCAGCAGGACACGGTGGTCTTCAAGGTGACAGAAGGGAAACTCCTCC GGGACCCTTTGTCACGTCCTGGTGCAGAACAGACTGGAATACAGAACAAG ACTCAGATACACCCACTAATGTCGCAGATGTCTGGCTCAGTTACTGCTTC TATGGCCACAGGTTCAGCTACCCGAAAGGGTATAGTGGTATTAATAGACC CATTAGCAGCCAATGGGACAACAGACATGCATACCTCAGTTCCAAGAGTG AAAGGTGGGCAAAGAAATATTACTGATGACAGCAGAGACCAGCCTTTTAT CAAGAAGATGCACTTCACCATAAGGCTAACAGAAAGTGCCAGCACATACA GAGACATTGTAGTGAAGAAAGAGGATGGATTCACCCAGATAGTGCTATCA ACTAGATCGACAGAAAAAAATGCACTGAATACAGAAGTAATTAAAGAAAT AGTTAATGCTCTGAATAGCGCTGCTGCAGATGACAGCAAGCTCGTGCTGT TCAGTGCAGCTGGAAGTGTCTTTTGCTGCGGTCTTGATTTTGGGTACTTT GTGAAGCACTTAAGGAATAACAGAAACACAGCAAGCCTTGAAATGGTGGA CACCATCAAGAACTTTGTGAATACTTTTATTCAATTTAAAAAGCCTATTG TTGTATCAGTCAATGGCCCTGCGATTGGACTAGGTTTGTGATCTCGTGTG GGCTAATGAAAAGGCTTGGTTCCAAACCCCTTATACGACCTTTGGACAGA GTCCAGATGGCTGTTCTTCTATTACATTCCCCAAAATGATGGGTAAAGCA TCTGCCAATGAAATGTTAATTGCTGGGCGAAAGCTGACAGCAAGGGAGGC ATGCGCCAAAGGCCTGGTCTCTCAGGTATTTTTGACTGGAACTTTCACCC AAGAGGTTATGATTCAAATTAAGGAGCTTGCCTCATACAATCCAATTGTA CTGGAAGAATGTAAGGCCCTCGTTCGCTGTAATATTAAGTTGGAGTTGGA ACAGGCCAATGAGAGAGAGTGTGAGGTGCTGAGGAAGATCTGGAGCTCAG CCCAAGGGATAGAATCCATGTTAAAAATACCTCTGTTGGGATATAAAGCA GCCTTCCCTCCCAGAAAGACACAGAATGATCAGAGATGGTGCCCT	chrY	25617117	25629902
a0004c0005	0/0	1660	1	0	0	1	0	0	CDY1_chrY_25617117_25629902	CDY1	ATGGC others(1655): Show ATGGCTTCCCAGGAGTTTGAGGTTGAAGCTATTGTTGACAAAAGACAGGA TAAAAATGGGAATACACAGTATTTGGTTCGGTGGAAAGGTTATGACAAAC AGGATGACACTTGGGAACCAGAGCAGCACCTCATGAACTGTGAAAAATGT GTACATGATTTTAATAGACGACAGACTGAAAAACAGAAAAACTGACATGG ACTACAACCAGTAGAATTTTTTCAAACAATGCCAGAAGAAGAACTTCCAG ATCTACAAAAGCAAACTATTCTAAGAACTCTCCTAAAACGCCAGTGACTG ATAAACACCACAGGTCCAAAAACCGCAAGTTATTTGCTGCCAGCAAGAAC GTTAGGAGAAAGGCAGCTTCAATTCTCTCCGACACAAAGAATATGGAGAT AATAAATTCAACTATTGAGACCCTTGCACCTGACAGCCCCTTTGACCACA AAACTGTGAGTGGCTTTCAGAAACTGAGAAACTGGACCCTATTGCAGCAG ATCAGCAGGACACGGTGGTCTTCAAGGTGACAGAAGGGAAACTCCTCCGG GACCCTTTGTCACGTCCTGGTGCAGAACAGACTGGAATACAGAACAAGAC TCAGATACACCCACTAATGTCGCAGATGTCTGGCTCAGTTACTGCTTCTA TGGCCACAGGTTCAGCTACCCGAAAGGGTATAGTGGTATTAATAGACCCA TTAGCAGCCAATGGGACAACAGACATGCATACCTCAGTTCCAAGAGTGAA AGGTGGGCAAAGAAATATTACTGATGACAGCAGAGACCAGCCTTTTATCA AGAAGATGCACTTCACCATAAGGCTAACAGAAAGTGCCAGCACATACAGA GACATTGTAGTGAAGAAAGAGGATGGATTCACCCAGATAGTGCTATCAAC TAGATCGACAGAAAAAAATGCACTGAATACAGAAGTAATTAAAGAAATAG TTAATGCTCTGAATAGCGCTGCTGCAGATGACAGCAAGCTCGTGCTGTTC AGTGCAGCTGGAAGTGTCCTTTTGCTGCGGTCTTGATTTTGGGTACTTTG TGAAGCACTTAAGGAATACAGAAACACAGCAAGCCTTGAAATGGTGGACA CCATCAAGAACTTTGTGAATACTTTTATTCAATTTAAAAAGCCTATTGTT GTATCAGTCAATGGCCCTGCGATTGGACTAGGTGCATCCATCCTGCCTCT TTGTGATCTCGTGTGGGCTAATGAAAAGGCTTGGTTCCAAACCCCTTATA CGACCTTTGGACAGAGTCCAGATGGCTGTTTCTTCTATTACATTCCCCAA AATGATGGGTAAAGCATCTGCCAATGAAATGTTAATTGCTGGGCGAAAGC TGACAGCAAGGGAGGCATGCGCCAAAGGCCTGGTCTCTCAGGTATTTTTG ACTGGAACTTTCACCCAAGAGGTTATGATTCAAATTAAGGAGCTTGCCTC ATACAATCCAATTGTACTGGAAGAATGTAAGGCCCTCGTTCGCTGTAATA TTAAGTTGGAGTTGGAACAGGCCAATGAGAGAGAGTGTGAGGTGCTGAGG AAGATCTGGAGCTCAGCCCAAGGGATAGAATCCATGTTAAAAATACCTCT GTTGGGATATAAGCAGCCTTCCCTCCCAGAAAGACACAGAATGATCAGAG ATGGTGCCCT	chrY	25617117	25629902

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	2366	59	10	6	35	0	8	CDY1_chrY_25617117_25629902	CDY1	AACAG others(2361): Show AACAGGCAGGAAGAAAGCTTTCTGTACTACACCAGAGGGTTGGGGCTGTG GATTTAGCTACTCTCACCTGAGGCTACTGAGCAAGTTGTCATGCACCATG AGACAAAGCCCAAGCTGTCCCACCAGGCAGTAAGTATGGAGAGGTTCAGG CACATGGCATAGCTGCTATTTCGCACAATTTTCACTACACCAGTGGTGAC AAAATAGAAGAGGTTCATCCATACACAGAACCTGGTGAAGAGTTGGAGGC AGAAAGAAGTGTCTATGTGGAGACGCAACTGAAACAAAGGTGGCACAGCA ACTGTTCCAATCCCGTGTCTTTCCTCATGGCTTCCCAGGAGTTTGAGGTT GAAGCTATTGTTGACAAAAGACAGGATAAAAATGGGAATACACAGTATTT GGTTCGGTGGAAAGGTTATGACAAACAGGATGACACTTGGGAACCAGAGC AGCACCTCATGAACTGTGAAAAATGTGTACATGATTTTAATAGACGACAG ACTGAAAAACAGAAAAAACTGACATGGACTACAACCAGTAGAATTTTTTC AAACAATGCCAGAAGAAGAACTTCCAGATCTACAAAAGCAAACTATTCTA AGAACTCTCCTAAAACGCCAGTGACTGATAAACACCACAGGTCCAAAAAC CGCAAGTTATTTGCTGCCAGCAAGAACGTTAGGAGAAAGGCAGCTTCAAT TCTCTCCGACACAAAGAATATGGAGATAATAAATTCAACTATTGAGACCC TTGCACCTGACAGCCCCTTTGACCACAAAACTGTGAGTGGCTTTCAGAAA CTTGAGAAACTGGACCCTATTGCAGCAGATCAGCAGGACACGGTGGTCTT CAAGGTGACAGAAGGGAAACTCCTCCGGGACCCTTTGTCACGTCCTGGTG CAGAACAGACTGGAATACAGAACAAGACTCAGATACACCCACTAATGTCG CAGATGTCTGGCTCAGTTACTGCTTCTATGGCCACAGGTTCAGCTACCCG AAAGGGTATAGTGGTATTAATAGACCCATTAGCAGCCAATGGGACAACAG ACATGCATACCTCAGTTCCAAGAGTGAAAGGTGGGCAAAGAAATATTACT GATGACAGCAGAGACCAGCCTTTTATCAAGAAGATGCACTTCACCATAAG GCTAACAGAAAGTGCCAGCACATACAGAGACATTGTAGTGAAGAAAGAGG ATGGATTCACCCAGATAGTGCTATCAACTAGATCGACAGAAAAAAATGCA CTGAATACAGAAGTAATTAAAGAAATAGTTAATGCTCTGAATAGCGCTGC TGCAGATGACAGCAAGCTCGTGCTGTTCAGTGCAGCTGGAAGTGTCTTTT GCTGCGGTCTTGATTTTGGGTACTTTGTGAAGCACTTAAGGAATAACAGA AACACAGCAAGCCTTGAAATGGTGGACACCATCAAGAACTTTGTGAATAC TTTTATTCAATTTAAAAAGCCTATTGTTGTATCAGTCAATGGCCCTGCGA TTGGACTAGGTGCATCCATCCTGCCTCTTTGTGATCTCGTGTGGGCTAAT GAAAAGGCTTGGTTCCAAACCCCTTATACGACCTTTGGACAGAGTCCAGA TGGCTGTTCTTCTATTACATTCCCCAAAATGATGGGTAAAGCATCTGCCA ATGAAATGTTAATTGCTGGGCGAAAGCTGACAGCAAGGGAGGCATGCGCC AAAGGCCTGGTCTCTCAGGTATTTTTGACTGGAACTTTCACCCAAGAGGT TATGATTCAAATTAAGGAGCTTGCCTCATACAATCCAATTGTACTGGAAG AATGTAAGGCCCTCGTTCGCTGTAATATTAAGTTGGAGTTGGAACAGGCC AATGAGAGAGAGTGTGAGGTGCTGAGGAAGATCTGGAGCTCAGCCCAAGG GATAGAATCCATGTTAAAAATACCTCTGTTGGGATATAAAGCAGCCTTCC CTCCCAGAAAGACACAGAATGATCAGAGATGGTGCCCTTGACTTTATAGT GGCACAAACGCTTCAGAGACACACAATTATAAGAGACTTATCTTTTAGCA TAAATACTTATGGCTCAAAATCCACTGACGATCATTCTCCTAAACTGAAC ACATGACTAGAATTGGTGGTGAGATATCGCTTGATTTTCTTTTCCTTTAT AAATGTCTAGTTCTTACCCAGTTAACAAAAGAAAACTTTATCGCTCTAAA GTAAAACTTGTTACACCACATTAGTGAATTATGGAATGATTTTGGTGGAA ATATCCAGGTTCTAATGTGTGGAATGTGCAGATTTAGGTTACTTTAGTGT ATGTTCTAGTTAATAAGTTAAAATTCTGGACACATTATTAAAGGCAGAAA CTTCTTTCAAAGCAAA	chrY	25617117	25629902
a0001c0001t0002	0/0	2366	19	0	6	10	3	0	CDY1_chrY_25617117_25629902	CDY1	AACAG others(2361): Show AACAGGCAGGAAGAAAGCTTTCTGTACTACACCAGAGGGTTGGGGCTGTG GATTTAGCTACTCTCACCTGAGGCTACTGAGCAAGTTGTCATGCACCATG AGACAAAGCCCAAGCTGTCCCACCAGGCAGTAAGTATGGAGAGGTTCAGG CACATGGCATAGCTGCTATTTCGCACAATTTTCACTACACCAGTGGTGAC AAAATAGAAGAGGTTCATCCATACACAGAACCTGGTGAAGAGCTGGAGGC AGAAAGAAGTGTCTATGTGGAGACGCAACTGAAACAAAGGTGGCACAGCA ACTGTTCCAATCCCGTGTCTTTCCTCATGGCTTCCCAGGAGTTTGAGGTT GAAGCTATTGTTGACAAAAGACAGGATAAAAATGGGAATACACAGTATTT GGTTCGGTGGAAAGGTTATGACAAACAGGATGACACTTGGGAACCAGAGC AGCACCTCATGAACTGTGAAAAATGTGTACATGATTTTAATAGACGACAG ACTGAAAAACAGAAAAAACTGACATGGACTACAACCAGTAGAATTTTTTC AAACAATGCCAGAAGAAGAACTTCCAGATCTACAAAAGCAAACTATTCTA AGAACTCTCCTAAAACGCCAGTGACTGATAAACACCACAGGTCCAAAAAC CGCAAGTTATTTGCTGCCAGCAAGAACGTTAGGAGAAAGGCAGCTTCAAT TCTCTCCGACACAAAGAATATGGAGATAATAAATTCAACTATTGAGACCC TTGCACCTGACAGCCCCTTTGACCACAAAACTGTGAGTGGCTTTCAGAAA CTTGAGAAACTGGACCCTATTGCAGCAGATCAGCAGGACACGGTGGTCTT CAAGGTGACAGAAGGGAAACTCCTCCGGGACCCTTTGTCACGTCCTGGTG CAGAACAGACTGGAATACAGAACAAGACTCAGATACACCCACTAATGTCG CAGATGTCTGGCTCAGTTACTGCTTCTATGGCCACAGGTTCAGCTACCCG AAAGGGTATAGTGGTATTAATAGACCCATTAGCAGCCAATGGGACAACAG ACATGCATACCTCAGTTCCAAGAGTGAAAGGTGGGCAAAGAAATATTACT GATGACAGCAGAGACCAGCCTTTTATCAAGAAGATGCACTTCACCATAAG GCTAACAGAAAGTGCCAGCACATACAGAGACATTGTAGTGAAGAAAGAGG ATGGATTCACCCAGATAGTGCTATCAACTAGATCGACAGAAAAAAATGCA CTGAATACAGAAGTAATTAAAGAAATAGTTAATGCTCTGAATAGCGCTGC TGCAGATGACAGCAAGCTCGTGCTGTTCAGTGCAGCTGGAAGTGTCTTTT GCTGCGGTCTTGATTTTGGGTACTTTGTGAAGCACTTAAGGAATAACAGA AACACAGCAAGCCTTGAAATGGTGGACACCATCAAGAACTTTGTGAATAC TTTTATTCAATTTAAAAAGCCTATTGTTGTATCAGTCAATGGCCCTGCGA TTGGACTAGGTGCATCCATCCTGCCTCTTTGTGATCTCGTGTGGGCTAAT GAAAAGGCTTGGTTCCAAACCCCTTATACGACCTTTGGACAGAGTCCAGA TGGCTGTTCTTCTATTACATTCCCCAAAATGATGGGTAAAGCATCTGCCA ATGAAATGTTAATTGCTGGGCGAAAGCTGACAGCAAGGGAGGCATGCGCC AAAGGCCTGGTCTCTCAGGTATTTTTGACTGGAACTTTCACCCAAGAGGT TATGATTCAAATTAAGGAGCTTGCCTCATACAATCCAATTGTACTGGAAG AATGTAAGGCCCTCGTTCGCTGTAATATTAAGTTGGAGTTGGAACAGGCC AATGAGAGAGAGTGTGAGGTGCTGAGGAAGATCTGGAGCTCAGCCCAAGG GATAGAATCCATGTTAAAAATACCTCTGTTGGGATATAAAGCAGCCTTCC CTCCCAGAAAGACACAGAATGATCAGAGATGGTGCCCTTGACTTTATAGT GGCACAAACGCTTCAGAGACACACAATTATAAGAGACTTATCTTTTAGCA TAAATACTTATGGCTCAAAATCCACTGACGATCATTCTCCTAAACTGAAC ACATGACTAGAATTGGTGGTGAGATATCGCTTGATTTTCTTTTCCTTTAT AAATGTCTAGTTCTTACCCAGTTAACAAAAGAAAACTTTATCGCTCTAAA GTAAAACTTGTTACACCACATTAGTGAATTATGGAATGATTTTGGTGGAA ATATCCAGGTTCTAATGTGTGGAATGTGCAGATTTAGGTTACTTTAGTGT ATGTTCTAGTTAATAAGTTAAAATTCTGGACACATTATTAAAGGCAGAAA CTTCTTTCAAAGCAAA	chrY	25617117	25629902
a0001c0001t0004	0/0	2366	1	0	0	0	0	1	CDY1_chrY_25617117_25629902	CDY1	AACAG others(2361): Show AACAGGCAGGAAGAAAGCTTTCTGTACTACACCAGAGGGTTGGGGCTGTG GATTTAGCTACTCTCACCTGAGGCTACTGAGCAAGTTGTCATGCACCATG AGACAAAGCCCAAGCTGTCCCACCAGGCAGTAAGTATGGAGAGGTTCACG CACATGGCATAGCTGCTATTTCGCACAATTTTCACTACACCAGTGGTGAC AAAATAGAAGAGGTTCATCCATACACAGAACCTGGTGAAGAGTTGGAGGC AGAAAGAAGTGTCTATGTGGAGACGCAACTGAAACAAAGGTGGCACAGCA ACTGTTCCAATCCCGTGTCTTTCCTCATGGCTTCCCAGGAGTTTGAGGTT GAAGCTATTGTTGACAAAAGACAGGATAAAAATGGGAATACACAGTATTT GGTTCGGTGGAAAGGTTATGACAAACAGGATGACACTTGGGAACCAGAGC AGCACCTCATGAACTGTGAAAAATGTGTACATGATTTTAATAGACGACAG ACTGAAAAACAGAAAAAACTGACATGGACTACAACCAGTAGAATTTTTTC AAACAATGCCAGAAGAAGAACTTCCAGATCTACAAAAGCAAACTATTCTA AGAACTCTCCTAAAACGCCAGTGACTGATAAACACCACAGGTCCAAAAAC CGCAAGTTATTTGCTGCCAGCAAGAACGTTAGGAGAAAGGCAGCTTCAAT TCTCTCCGACACAAAGAATATGGAGATAATAAATTCAACTATTGAGACCC TTGCACCTGACAGCCCCTTTGACCACAAAACTGTGAGTGGCTTTCAGAAA CTTGAGAAACTGGACCCTATTGCAGCAGATCAGCAGGACACGGTGGTCTT CAAGGTGACAGAAGGGAAACTCCTCCGGGACCCTTTGTCACGTCCTGGTG CAGAACAGACTGGAATACAGAACAAGACTCAGATACACCCACTAATGTCG CAGATGTCTGGCTCAGTTACTGCTTCTATGGCCACAGGTTCAGCTACCCG AAAGGGTATAGTGGTATTAATAGACCCATTAGCAGCCAATGGGACAACAG ACATGCATACCTCAGTTCCAAGAGTGAAAGGTGGGCAAAGAAATATTACT GATGACAGCAGAGACCAGCCTTTTATCAAGAAGATGCACTTCACCATAAG GCTAACAGAAAGTGCCAGCACATACAGAGACATTGTAGTGAAGAAAGAGG ATGGATTCACCCAGATAGTGCTATCAACTAGATCGACAGAAAAAAATGCA CTGAATACAGAAGTAATTAAAGAAATAGTTAATGCTCTGAATAGCGCTGC TGCAGATGACAGCAAGCTCGTGCTGTTCAGTGCAGCTGGAAGTGTCTTTT GCTGCGGTCTTGATTTTGGGTACTTTGTGAAGCACTTAAGGAATAACAGA AACACAGCAAGCCTTGAAATGGTGGACACCATCAAGAACTTTGTGAATAC TTTTATTCAATTTAAAAAGCCTATTGTTGTATCAGTCAATGGCCCTGCGA TTGGACTAGGTGCATCCATCCTGCCTCTTTGTGATCTCGTGTGGGCTAAT GAAAAGGCTTGGTTCCAAACCCCTTATACGACCTTTGGACAGAGTCCAGA TGGCTGTTCTTCTATTACATTCCCCAAAATGATGGGTAAAGCATCTGCCA ATGAAATGTTAATTGCTGGGCGAAAGCTGACAGCAAGGGAGGCATGCGCC AAAGGCCTGGTCTCTCAGGTATTTTTGACTGGAACTTTCACCCAAGAGGT TATGATTCAAATTAAGGAGCTTGCCTCATACAATCCAATTGTACTGGAAG AATGTAAGGCCCTCGTTCGCTGTAATATTAAGTTGGAGTTGGAACAGGCC AATGAGAGAGAGTGTGAGGTGCTGAGGAAGATCTGGAGCTCAGCCCAAGG GATAGAATCCATGTTAAAAATACCTCTGTTGGGATATAAAGCAGCCTTCC CTCCCAGAAAGACACAGAATGATCAGAGATGGTGCCCTTGACTTTATAGT GGCACAAACGCTTCAGAGACACACAATTATAAGAGACTTATCTTTTAGCA TAAATACTTATGGCTCAAAATCCACTGACGATCATTCTCCTAAACTGAAC ACATGACTAGAATTGGTGGTGAGATATCGCTTGATTTTCTTTTCCTTTAT AAATGTCTAGTTCTTACCCAGTTAACAAAAGAAAACTTTATCGCTCTAAA GTAAAACTTGTTACACCACATTAGTGAATTATGGAATGATTTTGGTGGAA ATATCCAGGTTCTAATGTGTGGAATGTGCAGATTTAGGTTACTTTAGTGT ATGTTCTAGTTAATAAGTTAAAATTCTGGACACATTATTAAAGGCAGAAA CTTCTTTCAAAGCAAA	chrY	25617117	25629902
a0001c0001t0005	0/0	2366	1	1	0	0	0	0	CDY1_chrY_25617117_25629902	CDY1	AACAG others(2361): Show AACAGGCAGGAAGAAAGCTTTCTGTACTACACCAGAGGGTTGGGGCTGTG GATTTAGCTACTCTCACCTGAGGCTACTGAGCAAGTTGTCATGCACCATG AGACAAAGCCCAAGCTGTCCCACCAGGCAGTAAGTATGGAGAGGTTCAGG CACATGGCATAGCTGCTATTTCGCACAATTTTCACTACACCAGTGGTGAC AAAATAGAAGAGGTTCATCCATACACAGAACCTGGTGAAGAGCTGGAGGC AGAAAGAAGTGTCTATGTGGAGACGCAACTGAAACAAAGGTGGCACAGCA ACTGTTCCAATCCCGTGTCTTTCCTCATGGCTTCCCAGGAGTTTGAGGTT GAAGCTATTGTTGACAAAAGACAGGATAAAAATGGGAATACACAGTATTT GGTTCGGTGGAAAGGTTATGACAAACAGGATGACACTTGGGAACCAGAGC AGCACCTCATGAACTGTGAAAAATGTGTACATGATTTTAATAGACGACAG ACTGAAAAACAGAAAAAACTGACATGGACTACAACCAGTAGAATTTTTTC AAACAATGCCAGAAGAAGAACTTCCAGATCTACAAAAGCAAACTATTCTA AGAACTCTCCTAAAACGCCAGTGACTGATAAACACCACAGGTCCAAAAAC CGCAAGTTATTTGCTGCCAGCAAGAACGTTAGGAGAAAGGCAGCTTCAAT TCTCTCCGACACAAAGAATATGGAGATAATAAATTCAACTATTGAGACCC TTGCACCTGACAGCCCCTTTGACCACAAAACTGTGAGTGGCTTTCAGAAA CTTGAGAAACTGGACCCTATTGCAGCAGATCAGCAGGACACGGTGGTCTT CAAGGTGACAGAAGGGAAACTCCTCCGGGACCCTTTGTCACGTCCTGGTG CAGAACAGACTGGAATACAGAACAAGACTCAGATACACCCACTAATGTCG CAGATGTCTGGCTCAGTTACTGCTTCTATGGCCACAGGTTCAGCTACCCG AAAGGGTATAGTGGTATTAATAGACCCATTAGCAGCCAATGGGACAACAG ACATGCATACCTCAGTTCCAAGAGTGAAAGGTGGGCAAAGAAATATTACT GATGACAGCAGAGACCAGCCTTTTATCAAGAAGATGCACTTCACCATAAG GCTAACAGAAAGTGCCAGCACATACAGAGACATTGTAGTGAAGAAAGAGG ATGGATTCACCCAGATAGTGCTATCAACTAGATCGACAGAAAAAAATGCA CTGAATACAGAAGTAATTAAAGAAATAGTTAATGCTCTGAATAGCGCTGC TGCAGATGACAGCAAGCTCGTGCTGTTCAGTGCAGCTGGAAGTGTCTTTT GCTGCGGTCTTGATTTTGGGTACTTTGTGAAGCACTTAAGGAATAACAGA AACACAGCAAGCCTTGAAATGGTGGACACCATCAAGAACTTTGTGAATAC TTTTATTCAATTTAAAAAGCCTATTGTTGTATCAGTCAATGGCCCTGCGA TTGGACTAGGTGCATCCATCCTGCCTCTTTGTGATCTCGTGTGGGCTAAT GAAAAGGCTTGGTTCCAAACCCCTTATACGACCTTTGGACAGAGTCCAGA TGGCTGTTCTTCTATTACATTCCCCAAAATGATGGGTAAAGCATCTGCCA ATGAAATGTTAATTGCTGGGCGAAAGCTGACAGCAAGGGAGGCATGCGCC AAAGGCCTGGTCTCTCAGGTATTTTTGACTGGAACTTTCACCCAAGAGGT TATGATTCAAATTAAGGAGCTTGCCTCATACAATCCAATTGTACTGGAAG AATGTAAGGCCCTCGTTCGCTGTAATATTAAGTTGGAGTTGGAACAGGCC AATGAGAGAGAGTGTGAGGTGCTGAGGAAGATCTGGAGCTCAGCCCAAGG GATAGAATCCATGTTAAAAATACCTCTGTTGGGATATAAAGCAGCCTTCC CTCCCAGAAAGACACAGAATGATCAGAGATGGTGCCCTTGACTTTATAGT GGCACAAACGCTTCAGAGACACACAATTATAAGAGACTTATCTTTTAGCA TAAATACTTATGGCTCAAAATCCACTGACGATCATTCTCCTAAACTGAAC ACATGACTAGAATTGGTGGTGAGATATCGCTTGATTTTCTTTTCCTTTAT AAATGTCTAGTTCTTACCCAGTTAACAAAAGAAAACTTTATCGCTCTAAA GTAAAACTTGTTACACGACATTAGTGAATTATGGAATGATTTTGGTGGAA ATATCCAGGTTCTAATGTGTGGAATGTGCAGATTTAGGTTACTTTAGTGT ATGTTCTAGTTAATAAGTTAAAATTCTGGACACATTATTAAAGGCAGAAA CTTCTTTCAAAGCAAA	chrY	25617117	25629902
a0001c0001t0007	0/0	2365	1	0	0	1	0	0	CDY1_chrY_25617117_25629902	CDY1	AACAG others(2360): Show AACAGGCAGGAAGAAAGCTTTCTGTACTACACCAGAGGGTTGGGGCTGTG GATTTAGCTACTCTCACCTGAGGCTACTGAGCAAGTTGTCATGCACCATG AGACAAAGCCCAAGCTGTCCCACCAGGCAGTAAGTATGGAGAGGTTCAGG CACATGGCATAGCTGCTATTTCGCACAATTTTCACTACACCAGTGGTGAC AAAATAGAAGAGGTTCATCCATACACAGAACCTGGTGAAGAGTTGGAGGC AGAAAGAAGTGTCTATGTGGAGACGCAACTGAAACAAAGGTGGCACAGCA ACTGTTCCAATCCCGTGTCTTTCCTCATGGCTTCCCAGGAGTTTGAGGTT GAAGCTATTGTTGACAAAAGACAGGATAAAAATGGGAATACACAGTATTT GGTTCGGTGGAAAGGTTATGACAAACAGGATGACACTTGGGAACCAGAGC AGCACCTCATGAACTGTGAAAAATGTGTACATGATTTTAATAGACGACAG ACTGAAAAACAGAAAAAACTGACATGGACTACAACCAGTAGAATTTTTTC AAACAATGCCAGAAGAAGAACTTCCAGATCTACAAAAGCAAACTATTCTA AGAACTCTCCTAAAACGCCAGTGACTGATAAACACCACAGGTCCAAAAAC CGCAAGTTATTTGCTGCCAGCAAGAACGTTAGGAGAAAGGCAGCTTCAAT TCTCTCCGACACAAAGAATATGGAGATAATAAATTCAACTATTGAGACCC TTGCACCTGACAGCCCCTTTGACCACAAAACTGTGAGTGGCTTTCAGAAA CTTGAGAAACTGGACCCTATTGCAGCAGATCAGCAGGACACGGTGGTCTT CAAGGTGACAGAAGGGAAACTCCTCCGGGACCCTTTGTCACGTCCTGGTG CAGAACAGACTGGAATACAGAACAAGACTCAGATACACCCACTAATGTCG CAGATGTCTGGCTCAGTTACTGCTTCTATGGCCACAGGTTCAGCTACCCG AAAGGGTATAGTGGTATTAATAGACCCATTAGCAGCCAATGGGACAACAG ACATGCATACCTCAGTTCCAAGAGTGAAAGGTGGGCAAAGAAATATTACT GATGACAGCAGAGACCAGCCTTTTATCAAGAAGATGCACTTCACCATAAG GCTAACAGAAAGTGCCAGCACATACAGAGACATTGTAGTGAAGAAAGAGG ATGGATTCACCCAGATAGTGCTATCAACTAGATCGACAGAAAAAAATGCA CTGAATACAGAAGTAATTAAAGAAATAGTTAATGCTCTGAATAGCGCTGC TGCAGATGACAGCAAGCTCGTGCTGTTCAGTGCAGCTGGAAGTGTCTTTT GCTGCGGTCTTGATTTTGGGTACTTTGTGAAGCACTTAAGGAATAACAGA AACACAGCAAGCCTTGAAATGGTGGACACCATCAAGAACTTTGTGAATAC TTTTATTCAATTTAAAAAGCCTATTGTTGTATCAGTCAATGGCCCTGCGA TTGGACTAGGTGCATCCATCCTGCCTCTTTGTGATCTCGTGTGGGCTAAT GAAAAGGCTTGGTTCCAAACCCCTTATACGACCTTTGGACAGAGTCCAGA TGGCTGTTCTTCTATTACATTCCCCAAAATGATGGGTAAAGCATCTGCCA ATGAAATGTTAATTGCTGGGCGAAAGCTGACAGCAAGGGAGGCATGCGCC AAAGGCCTGGTCTCTCAGGTATTTTTGACTGGAACTTTCACCCAAGAGGT TATGATTCAAATTAAGGAGCTTGCCTCATACAATCCAATTGTACTGGAAG AATGTAAGGCCCTCGTTCGCTGTAATATTAAGTTGGAGTTGGAACAGGCC AATGAGAGAGAGTGTGAGGTGCTGAGGAAGATCTGGAGCTCAGCCCAAGG GATAGAATCCATGTTAAAAATACCTCTGTTGGGATATAAAGCAGCCTTCC CTCCCAGAAAGACACAGAATGATCAGAGATGGTGCCCTTGACTTTATAGT GGCACAAACGCTTCAGAGACACACAATTATAAGAGACTTATCTTTTAGCA TAAATACTTATGGCTCAAAATCCACTGACGATCATTCTCCTAAACTGAAC ACATGACTAGAATTGGTGGTGAGATATCGCTTGATTTTCTTTTCCTTTAT AAATGTCTAGTTCTTACCCAGTTAACAAAAGAAAACTTTATCGCTCTAAG TAAAACTTGTTACACCACATTAGTGAATTATGGAATGATTTTGGTGGAAA TATCCAGGTTCTAATGTGTGGAATGTGCAGATTTAGGTTACTTTAGTGTA TGTTCTAGTTAATAAGTTAAAATTCTGGACACATTATTAAAGGCAGAAAC TTCTTTCAAAGCAAA	chrY	25617117	25629902
a0001c0002t0001	0/0	2366	7	0	4	0	1	2	CDY1_chrY_25617117_25629902	CDY1	AACAG others(2361): Show AACAGGCAGGAAGAAAGCTTTCTGTACTACACCAGAGGGTTGGGGCTGTG GATTTAGCTACTCTCACCTGAGGCTACTGAGCAAGTTGTCATGCACCATG AGACAAAGCCCAAGCTGTCCCACCAGGCAGTAAGTATGGAGAGGTTCAGG CACATGGCATAGCTGCTATTTCGCACAATTTTCACTACACCAGTGGTGAC AAAATAGAAGAGGTTCATCCATACACAGAACCTGGTGAAGAGTTGGAGGC AGAAAGAAGTGTCTATGTGGAGACGCAACTGAAACAAAGGTGGCACAGCA ACTGTTCCAATCCCGTGTCTTTCCTCATGGCTTCCCAGGAGTTTGAGGTT GAAGCTATTGTTGACAAAAGACAGGATAAAAATGGGAATACACAGTATTT GGTTCGGTGGAAAGGTTATGACAAACAGGATGACACTTGGGAACCAGAGC AGCACCTCATGAACTGTGAAAAATGTGTACATGATTTTAATAGACGACAG ACTGAAAAACAGAAAAAACTGACATGGACTACAACCAGTAGAATTTTTTC AAACAATGCCAGAAGAAGAACTTCCAGATCTACAAAAGCAAACTATTCTA AGAACTCTCCTAAAACGCCAGTGACTGATAAACACCACAGGTCCAAAAAC CGCAAGTTATTTGCTGCCAGCAAGAACGTTAGGAGAAAGGCAGCTTCAAT TCTCTCTGACACAAAGAATATGGAGATAATAAATTCAACTATTGAGACCC TTGCACCTGACAGCCCCTTTGACCACAAAACTGTGAGTGGCTTTCAGAAA CTTGAGAAACTGGACCCTATTGCAGCAGATCAGCAGGACACGGTGGTCTT CAAGGTGACAGAAGGGAAACTCCTCCGGGACCCTTTGTCACGTCCTGGTG CAGAACAGACTGGAATACAGAACAAGACTCAGATACACCCACTAATGTCG CAGATGTCTGGCTCAGTTACTGCTTCTATGGCCACAGGTTCAGCTACCCG AAAGGGTATAGTGGTATTAATAGACCCATTAGCAGCCAATGGGACAACAG ACATGCATACCTCAGTTCCAAGAGTGAAAGGTGGGCAAAGAAATATTACT GATGACAGCAGAGACCAGCCTTTTATCAAGAAGATGCACTTCACCATAAG GCTAACAGAAAGTGCCAGCACATACAGAGACATTGTAGTGAAGAAAGAGG ATGGATTCACCCAGATAGTGCTATCAACTAGATCGACAGAAAAAAATGCA CTGAATACAGAAGTAATTAAAGAAATAGTTAATGCTCTGAATAGCGCTGC TGCAGATGACAGCAAGCTCGTGCTGTTCAGTGCAGCTGGAAGTGTCTTTT GCTGCGGTCTTGATTTTGGGTACTTTGTGAAGCACTTAAGGAATAACAGA AACACAGCAAGCCTTGAAATGGTGGACACCATCAAGAACTTTGTGAATAC TTTTATTCAATTTAAAAAGCCTATTGTTGTATCAGTCAATGGCCCTGCGA TTGGACTAGGTGCATCCATCCTGCCTCTTTGTGATCTCGTGTGGGCTAAT GAAAAGGCTTGGTTCCAAACCCCTTATACGACCTTTGGACAGAGTCCAGA TGGCTGTTCTTCTATTACATTCCCCAAAATGATGGGTAAAGCATCTGCCA ATGAAATGTTAATTGCTGGGCGAAAGCTGACAGCAAGGGAGGCATGCGCC AAAGGCCTGGTCTCTCAGGTATTTTTGACTGGAACTTTCACCCAAGAGGT TATGATTCAAATTAAGGAGCTTGCCTCATACAATCCAATTGTACTGGAAG AATGTAAGGCCCTCGTTCGCTGTAATATTAAGTTGGAGTTGGAACAGGCC AATGAGAGAGAGTGTGAGGTGCTGAGGAAGATCTGGAGCTCAGCCCAAGG GATAGAATCCATGTTAAAAATACCTCTGTTGGGATATAAAGCAGCCTTCC CTCCCAGAAAGACACAGAATGATCAGAGATGGTGCCCTTGACTTTATAGT GGCACAAACGCTTCAGAGACACACAATTATAAGAGACTTATCTTTTAGCA TAAATACTTATGGCTCAAAATCCACTGACGATCATTCTCCTAAACTGAAC ACATGACTAGAATTGGTGGTGAGATATCGCTTGATTTTCTTTTCCTTTAT AAATGTCTAGTTCTTACCCAGTTAACAAAAGAAAACTTTATCGCTCTAAA GTAAAACTTGTTACACCACATTAGTGAATTATGGAATGATTTTGGTGGAA ATATCCAGGTTCTAATGTGTGGAATGTGCAGATTTAGGTTACTTTAGTGT ATGTTCTAGTTAATAAGTTAAAATTCTGGACACATTATTAAAGGCAGAAA CTTCTTTCAAAGCAAA	chrY	25617117	25629902
a0001c0002t0003	0/0	2366	1	0	1	0	0	0	CDY1_chrY_25617117_25629902	CDY1	AACAG others(2361): Show AACAGGCAGGAAGAAAGCTTTCTGTACTACACCAGAGGGTTGGGGCTGTG GATTTAGCTACTCTCACCTGAGGCTACTGAGCAAGTTGTCATGCACCATG AGACAAAGCCCAAGCTGTCCCACCAGGCAGTAAGTATGAAGAGGTTCAGG CACATGGCATAGCTGCTATTTCGCACAATTTTCACTACACCAGTGGTGAC AAAATAGAAGAGGTTCATCCATACACAGAACCTGGTGAAGAGTTGGAGGC AGAAAGAAGTGTCTATGTGGAGACGCAACTGAAACAAAGGTGGCACAGCA ACTGTTCCAATCCCGTGTCTTTCCTCATGGCTTCCCAGGAGTTTGAGGTT GAAGCTATTGTTGACAAAAGACAGGATAAAAATGGGAATACACAGTATTT GGTTCGGTGGAAAGGTTATGACAAACAGGATGACACTTGGGAACCAGAGC AGCACCTCATGAACTGTGAAAAATGTGTACATGATTTTAATAGACGACAG ACTGAAAAACAGAAAAAACTGACATGGACTACAACCAGTAGAATTTTTTC AAACAATGCCAGAAGAAGAACTTCCAGATCTACAAAAGCAAACTATTCTA AGAACTCTCCTAAAACGCCAGTGACTGATAAACACCACAGGTCCAAAAAC CGCAAGTTATTTGCTGCCAGCAAGAACGTTAGGAGAAAGGCAGCTTCAAT TCTCTCTGACACAAAGAATATGGAGATAATAAATTCAACTATTGAGACCC TTGCACCTGACAGCCCCTTTGACCACAAAACTGTGAGTGGCTTTCAGAAA CTTGAGAAACTGGACCCTATTGCAGCAGATCAGCAGGACACGGTGGTCTT CAAGGTGACAGAAGGGAAACTCCTCCGGGACCCTTTGTCACGTCCTGGTG CAGAACAGACTGGAATACAGAACAAGACTCAGATACACCCACTAATGTCG CAGATGTCTGGCTCAGTTACTGCTTCTATGGCCACAGGTTCAGCTACCCG AAAGGGTATAGTGGTATTAATAGACCCATTAGCAGCCAATGGGACAACAG ACATGCATACCTCAGTTCCAAGAGTGAAAGGTGGGCAAAGAAATATTACT GATGACAGCAGAGACCAGCCTTTTATCAAGAAGATGCACTTCACCATAAG GCTAACAGAAAGTGCCAGCACATACAGAGACATTGTAGTGAAGAAAGAGG ATGGATTCACCCAGATAGTGCTATCAACTAGATCGACAGAAAAAAATGCA CTGAATACAGAAGTAATTAAAGAAATAGTTAATGCTCTGAATAGCGCTGC TGCAGATGACAGCAAGCTCGTGCTGTTCAGTGCAGCTGGAAGTGTCTTTT GCTGCGGTCTTGATTTTGGGTACTTTGTGAAGCACTTAAGGAATAACAGA AACACAGCAAGCCTTGAAATGGTGGACACCATCAAGAACTTTGTGAATAC TTTTATTCAATTTAAAAAGCCTATTGTTGTATCAGTCAATGGCCCTGCGA TTGGACTAGGTGCATCCATCCTGCCTCTTTGTGATCTCGTGTGGGCTAAT GAAAAGGCTTGGTTCCAAACCCCTTATACGACCTTTGGACAGAGTCCAGA TGGCTGTTCTTCTATTACATTCCCCAAAATGATGGGTAAAGCATCTGCCA ATGAAATGTTAATTGCTGGGCGAAAGCTGACAGCAAGGGAGGCATGCGCC AAAGGCCTGGTCTCTCAGGTATTTTTGACTGGAACTTTCACCCAAGAGGT TATGATTCAAATTAAGGAGCTTGCCTCATACAATCCAATTGTACTGGAAG AATGTAAGGCCCTCGTTCGCTGTAATATTAAGTTGGAGTTGGAACAGGCC AATGAGAGAGAGTGTGAGGTGCTGAGGAAGATCTGGAGCTCAGCCCAAGG GATAGAATCCATGTTAAAAATACCTCTGTTGGGATATAAAGCAGCCTTCC CTCCCAGAAAGACACAGAATGATCAGAGATGGTGCCCTTGACTTTATAGT GGCACAAACGCTTCAGAGACACACAATTATAAGAGACTTATCTTTTAGCA TAAATACTTATGGCTCAAAATCCACTGACGATCATTCTCCTAAACTGAAC ACATGACTAGAATTGGTGGTGAGATATCGCTTGATTTTCTTTTCCTTTAT AAATGTCTAGTTCTTACCCAGTTAACAAAAGAAAACTTTATCGCTCTAAA GTAAAACTTGTTACACCACATTAGTGAATTATGGAATGATTTTGGTGGAA ATATCCAGGTTCTAATGTGTGGAATGTGCAGATTTAGGTTACTTTAGTGT ATGTTCTAGTTAATAAGTTAAAATTCTGGACACATTATTAAAGGCAGAAA CTTCTTTCAAAGCAAA	chrY	25617117	25629902
a0002c0003t0001	0/0	2366	1	0	0	0	1	0	CDY1_chrY_25617117_25629902	CDY1	AACAG others(2361): Show AACAGGCAGGAAGAAAGCTTTCTGTACTACACCAGAGGGTTGGGGCTGTG GATTTAGCTACTCTCACCTGAGGCTACTGAGCAAGTTGTCATGCACCATG AGACAAAGCCCAAGCTGTCCCACCAGGCAGTAAGTATGGAGAGGTTCAGG CACATGGCATAGCTGCTATTTCGCACAATTTTCACTACACCAGTGGTGAC AAAATAGAAGAGGTTCATCCATACACAGAACCTGGTGAAGAGTTGGAGGC AGAAAGAAGTGTCTATGTGGAGACGCAACTGAAACAAAGGTGGCACAGCA ACTGTTCCAATCCCGTGTCTTTCCTCATGGCTTCCCAGGAGTTTGAGGTT GAAGCTATTGTTGACAAAAGACAGGATAAAAATGGGAATACACAGTATTT GGTTCGGTGGAAAGGTTATGACAAACAGGATGACACTTGGGAACCAGAGC AGCACCTCATGAACTGTGAAAAATGTGTACATGATTTTAATAGACGACAG ACTGAAAAACAGAAAAAACTGACATGGACTACAACCAGTAGAATTTTTTC AAACAATGCCAGAAGAAGAACTTCCAGATCTACAAAAGCAAACTATTCTA AGAACTCTCCTAAAACGCCAGTGACTGATAAACACCACAGGTCCAAAAAC CGCAAGTTATTTGCTGCCAGCAAGAACGTTAGGAGAAAGGCAGCTTCAAT TCTCTCCGACACAAAGAATATGGAGATAATAAATTCAACTATTGAGACCC TTGCACCTGACAGCCCCTTTGACCACAAAACTGTGAGTGGCTTTCAGAAA CTTGAGAAACTGGACCCTATTGCAGCAGATCAGCAGGACACGGTGGTCTT CAAGGTGACAGAAGGGAAACTCCTCCGGGACCCTTTGTCACGTCCTGGTG CAGAACAGACTGGAATACAGAACAAGACTCAGATACACCCACTAATGTCG CAGATGTCTGGCTCAGTTACTGCTTCTATGGCCACAGGTTCAGCTACCCG AAAGGGTATAGTGGTATTAATAGACCCATTAGCAGCCAATGGGACAACAG ACATGCATACCTCAGTTCCAAGAGTGAAAGGTGGGCAAAGAAATATTACT GATGACAGCAGAGACCAGCCTTTTATCAAGAAGATGCACTTCACCATAAG GCTAACAGAAAGTGCCAGCACATACAGAGACATTGTAGTGAAGAAAGAGG ATGGATTCACCCAGATAGTGCTATCAACTAGATCGACAGAAAAAAATGCA CTGAATACAGAAGTAATTAAAGAAATAGTTAATGCTCTGAATAGCGCTGC TGCAGATGACAGCAAGCTCGTGCTGTTCAGTGCAGCTGGAAGTGTCTTTT GCTGCGGTCTTGATTTTGGGTACTTTGTGAAGCACTTAAGGAATAACAGA AACACAGCAAGCCTTGAAATGGTGGACACCATCAAGAACTTTGTGAATAC TTTTATTCAATTTAAAAAGCCTATTGTTGTATCAGTCAATGGCCCTGCGA TTGGACTAGGTGCATCCATCCTGCCTCTTTGTGATCTCGTGTGGGCTAAT GAAAAGGCTTGGTTCCAAACCCCTTATACGACCTTTGGACAGAGTCCAGA TGGCTGTTCTTCTATTACATTCCCCAAAATGATGGGTAAAGCATCTGCCA ATGAAATGTTAATTGCTGGGCGAAAGCTGACAGCAAGGGAGGCATGCGCC AAAGGCCTGGTCTCTCAGGTATTTTTGACTGGAACTTTCACCCAAGAGGT TATGATTCAAATTAAGGAGCTTGCCTCATACAATCCAATTGTACTGGAAG AATGTAAGGCCCTCATTCGCTGTAATATTAAGTTGGAGTTGGAACAGGCC AATGAGAGAGAGTGTGAGGTGCTGAGGAAGATCTGGAGCTCAGCCCAAGG GATAGAATCCATGTTAAAAATACCTCTGTTGGGATATAAAGCAGCCTTCC CTCCCAGAAAGACACAGAATGATCAGAGATGGTGCCCTTGACTTTATAGT GGCACAAACGCTTCAGAGACACACAATTATAAGAGACTTATCTTTTAGCA TAAATACTTATGGCTCAAAATCCACTGACGATCATTCTCCTAAACTGAAC ACATGACTAGAATTGGTGGTGAGATATCGCTTGATTTTCTTTTCCTTTAT AAATGTCTAGTTCTTACCCAGTTAACAAAAGAAAACTTTATCGCTCTAAA GTAAAACTTGTTACACCACATTAGTGAATTATGGAATGATTTTGGTGGAA ATATCCAGGTTCTAATGTGTGGAATGTGCAGATTTAGGTTACTTTAGTGT ATGTTCTAGTTAATAAGTTAAAATTCTGGACACATTATTAAAGGCAGAAA CTTCTTTCAAAGCAAA	chrY	25617117	25629902
a0003c0004t0006	0/0	2350	1	0	0	1	0	0	CDY1_chrY_25617117_25629902	CDY1	AACAG others(2345): Show AACAGGCAGGAAGAAAGCTTTCTGTACTACACCAGAGGGTTGGGGCTGTG GATTTAGCTACTCTCACCTGAGGCTACTGAGCAAGTTGTCATGCACCATG AGACAAAGCCCAAGCTGTCCCACCAGGCAGTAAGTATGGAGAGGTTCAGG CACATGGCATAGCTGCTATTTCGCACAATTTTCACTACACCAGTGGTGAC AAAATAGAAGAGGTTCATCCATACACAGAACCTGGTGAAGAGTTGGAGGC AGAAAGAAGTGTCTATGTGGAGACGCAACTGAAACAAAGGTGGCACAGCA ACTGTTCCAATCCCGTGTCTTTCCTCATGGCTTCCCAGGAGTTTGAGGTT GAAGCTATTGTTGACAAAAGACAGGATAAAAATGGGAATACACAGTATTT GGTTCGGTGGAAAGGTTATGACAAACAGGATGACACTTGGGAACCAGAGC AGCACCTCATGAACTGTGAAAAATGTGTACATGATTTTAATAGACGACAG ACTGAAAAACAGAAAAAACTGACATGGACTACAACCAGTAGAATTTTTTC AAACAATGCCAGAAGAAGAACTTCCAGATCTACAAAAGCAAACTATTCTA AGAACTCTCCTAAAACGCCAGTGACTGATAAACACCACAGGTCCAAAAAC CGCAAGTTATTTGCTGCCAGCAAGAACGTTAGGAGAAAGGCAGCTTCAAT TCTCTCCGACACAAAGAATATGGAGATAATAAATTCAACTATTGAGACCC TTGCACCTGACAGCCCCTTTGACCACAAAACTGTGAGTGGCTTTCAGAAA CTTGAGAAACTGGACCCTATTGCAGCAGATCAGCAGGACACGGTGGTCTT CAAGGTGACAGAAGGGAAACTCCTCCGGGACCCTTTGTCACGTCCTGGTG CAGAACAGACTGGAATACAGAACAAGACTCAGATACACCCACTAATGTCG CAGATGTCTGGCTCAGTTACTGCTTCTATGGCCACAGGTTCAGCTACCCG AAAGGGTATAGTGGTATTAATAGACCCATTAGCAGCCAATGGGACAACAG ACATGCATACCTCAGTTCCAAGAGTGAAAGGTGGGCAAAGAAATATTACT GATGACAGCAGAGACCAGCCTTTTATCAAGAAGATGCACTTCACCATAAG GCTAACAGAAAGTGCCAGCACATACAGAGACATTGTAGTGAAGAAAGAGG ATGGATTCACCCAGATAGTGCTATCAACTAGATCGACAGAAAAAAATGCA CTGAATACAGAAGTAATTAAAGAAATAGTTAATGCTCTGAATAGCGCTGC TGCAGATGACAGCAAGCTCGTGCTGTTCAGTGCAGCTGGAAGTGTCTTTT GCTGCGGTCTTGATTTTGGGTACTTTGTGAAGCACTTAAGGAATAACAGA AACACAGCAAGCCTTGAAATGGTGGACACCATCAAGAACTTTGTGAATAC TTTTATTCAATTTAAAAAGCCTATTGTTGTATCAGTCAATGGCCCTGCGA TTGGACTAGGTTTGTGATCTCGTGTGGGCTAATGAAAAGGCTTGGTTCCA AACCCCTTATACGACCTTTGGACAGAGTCCAGATGGCTGTTCTTCTATTA CATTCCCCAAAATGATGGGTAAAGCATCTGCCAATGAAATGTTAATTGCT GGGCGAAAGCTGACAGCAAGGGAGGCATGCGCCAAAGGCCTGGTCTCTCA GGTATTTTTGACTGGAACTTTCACCCAAGAGGTTATGATTCAAATTAAGG AGCTTGCCTCATACAATCCAATTGTACTGGAAGAATGTAAGGCCCTCGTT CGCTGTAATATTAAGTTGGAGTTGGAACAGGCCAATGAGAGAGAGTGTGA GGTGCTGAGGAAGATCTGGAGCTCAGCCCAAGGGATAGAATCCATGTTAA AAATACCTCTGTTGGGATATAAAGCAGCCTTCCCTCCCAGAAAGACACAG AATGATCAGAGATGGTGCCCTTGACCTTTATAGTGGCACAAACGCTTCAG AGACACACAATTATAAGAGACTTATCTTTTAGCATAAATACTTATGGCTC AAAATCCACTGACGATCATTCTCCTAAACTGAACACATGACTAGAATTGG TGGTGAGATATCGCTTGATTTTCTTTTCCTTTATAATGTCTAGTTCTTAC CCAGTTAACAAAAGAAAACTTTATCGCTCTAAAGTAAAACTTGTTACACC ACATTAGTGAATTATGGAATGATTTTGGTGGAAATATCCAGGTTCTAATG TGTGGAATGTGCAGATTTAGGTTTACTTAGTGTATGTTCTAGTTAATAAG TTTAAAATTCTGGACACATTATTAAAGGCAGAAACTTCTTTCAAAGCAAA	chrY	25617117	25629902
a0004c0005t0008	0/0	2363	1	0	0	1	0	0	CDY1_chrY_25617117_25629902	CDY1	AACAG others(2358): Show AACAGGCAGGAAGAAAGCTTTCTGTACTACACCAGAGGGTTGGGGCTGTG GATTTAGCTACTCTCACCTGAGGCTACTGAGCAAGTTGTCATGCACCATG AGACAAAGCCCAAGCTGTCCCACCAGGCAGTAAGTATGGAGAGGTTCAGG CACATGGCATAGCTGCTATTTCGCACAATTTTCACTACACCAGTGGTGAC AAAATAGAAGAGGTTCATCCATACACAGAACCTGGTGAAGAGTTGGAGGC AGAAAGAAGTGTCTATGTGGAGACGCAACTGAAACAAAGGTGGCACAGCA ACTGTTCCAATCCCGTGTCTTTCCTCATGGCTTCCCAGGAGTTTGAGGTT GAAGCTATTGTTGACAAAAGACAGGATAAAAATGGGAATACACAGTATTT GGTTCGGTGGAAAGGTTATGACAAACAGGATGACACTTGGGAACCAGAGC AGCACCTCATGAACTGTGAAAAATGTGTACATGATTTTAATAGACGACAG ACTGAAAAACAGAAAAACTGACATGGACTACAACCAGTAGAATTTTTTCA AACAATGCCAGAAGAAGAACTTCCAGATCTACAAAAGCAAACTATTCTAA GAACTCTCCTAAAACGCCAGTGACTGATAAACACCACAGGTCCAAAAACC GCAAGTTATTTGCTGCCAGCAAGAACGTTAGGAGAAAGGCAGCTTCAATT CTCTCCGACACAAAGAATATGGAGATAATAAATTCAACTATTGAGACCCT TGCACCTGACAGCCCCTTTGACCACAAAACTGTGAGTGGCTTTCAGAAAC TGAGAAACTGGACCCTATTGCAGCAGATCAGCAGGACACGGTGGTCTTCA AGGTGACAGAAGGGAAACTCCTCCGGGACCCTTTGTCACGTCCTGGTGCA GAACAGACTGGAATACAGAACAAGACTCAGATACACCCACTAATGTCGCA GATGTCTGGCTCAGTTACTGCTTCTATGGCCACAGGTTCAGCTACCCGAA AGGGTATAGTGGTATTAATAGACCCATTAGCAGCCAATGGGACAACAGAC ATGCATACCTCAGTTCCAAGAGTGAAAGGTGGGCAAAGAAATATTACTGA TGACAGCAGAGACCAGCCTTTTATCAAGAAGATGCACTTCACCATAAGGC TAACAGAAAGTGCCAGCACATACAGAGACATTGTAGTGAAGAAAGAGGAT GGATTCACCCAGATAGTGCTATCAACTAGATCGACAGAAAAAAATGCACT GAATACAGAAGTAATTAAAGAAATAGTTAATGCTCTGAATAGCGCTGCTG CAGATGACAGCAAGCTCGTGCTGTTCAGTGCAGCTGGAAGTGTCCTTTTG CTGCGGTCTTGATTTTGGGTACTTTGTGAAGCACTTAAGGAATACAGAAA CACAGCAAGCCTTGAAATGGTGGACACCATCAAGAACTTTGTGAATACTT TTATTCAATTTAAAAAGCCTATTGTTGTATCAGTCAATGGCCCTGCGATT GGACTAGGTGCATCCATCCTGCCTCTTTGTGATCTCGTGTGGGCTAATGA AAAGGCTTGGTTCCAAACCCCTTATACGACCTTTGGACAGAGTCCAGATG GCTGTTTCTTCTATTACATTCCCCAAAATGATGGGTAAAGCATCTGCCAA TGAAATGTTAATTGCTGGGCGAAAGCTGACAGCAAGGGAGGCATGCGCCA AAGGCCTGGTCTCTCAGGTATTTTTGACTGGAACTTTCACCCAAGAGGTT ATGATTCAAATTAAGGAGCTTGCCTCATACAATCCAATTGTACTGGAAGA ATGTAAGGCCCTCGTTCGCTGTAATATTAAGTTGGAGTTGGAACAGGCCA ATGAGAGAGAGTGTGAGGTGCTGAGGAAGATCTGGAGCTCAGCCCAAGGG ATAGAATCCATGTTAAAAATACCTCTGTTGGGATATAAGCAGCCTTCCCT CCCAGAAAGACACAGAATGATCAGAGATGGTGCCCTTGACTTTATAGTGG CACAACGCTTCAGAGACACACAATTATAAGAGACTTATCTTTTAGCATAA ATACTTATGGCTCAAAATCCACTGACGATCATTCTCCTAAACTGAACACA TGACTAGAATTGGTGGTGAGATATCGCTTGATTTTCTTTTCCTTTATAAA TGTCTAGTTCTTACCCAGTTAACAAAAGAAAACTTTATCGCTCTAAAGTA AAACTTGTTACACCACATTAGTGAATTATGGAATGATTTTGGTGGAAATA TCCAGGTTCTAATGTGTGGAATGTGCAGATTTAGGTTACTTTAGTGTATG TTCTAGTTAATAAGTTAAAATTCTGGACACATTATTAAAGGCAGAAACTT CTTTCAAAGCAAA	chrY	25617117	25629902

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	59	10	6	35	0	8	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
a0001c0001t0002g0001	0/0	18	0	6	9	3	0	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
a0001c0001t0002g0003	0/0	1	0	0	1	0	0	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
a0001c0001t0004g0001	0/0	1	0	0	0	0	1	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
a0001c0001t0005g0001	0/0	1	1	0	0	0	0	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
a0001c0001t0007g0001	0/0	1	0	0	1	0	0	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
a0001c0002t0001g0001	0/0	7	0	4	0	1	2	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
a0001c0002t0003g0001	0/0	1	0	1	0	0	0	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
a0002c0003t0001g0001	0/0	1	0	0	0	1	0	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
a0003c0004t0006g0002	0/0	1	0	0	1	0	0	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
a0004c0005t0008g0001	0/0	1	0	0	1	0	0	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0002	c0003	t0001	g0001	EUR	GBR	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG00280	hp1	a0001	c0001	t0002	g0001	EUR	FIN	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG00673	hp1	a0001	c0001	t0001	g0001	EAS	CHS	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG00738	hp1	a0001	c0001	t0002	g0001	AMR	PUR	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG01069	hp1	a0001	c0002	t0003	g0001	AMR	PUR	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG01099	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG01106	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG01109	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG01167	hp1	a0001	c0001	t0002	g0001	AMR	PUR	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG01243	hp1	a0001	c0001	t0002	g0001	AMR	PUR	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG01255	hp1	a0001	c0002	t0001	g0001	AMR	CLM	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG01256	hp1	a0001	c0002	t0001	g0001	AMR	CLM	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG01258	hp1	a0001	c0002	t0001	g0001	AMR	CLM	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG01261	hp1	a0001	c0001	t0002	g0001	AMR	CLM	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG01358	hp1	a0001	c0001	t0002	g0001	AMR	CLM	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG01433	hp1	a0001	c0002	t0001	g0001	AMR	CLM	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG01515	hp1	a0001	c0001	t0002	g0001	EUR	IBS	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG01928	hp1	a0001	c0001	t0001	g0001	AMR	PEL	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG01943	hp1	a0001	c0001	t0002	g0001	AMR	PEL	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG01952	hp1	a0001	c0001	t0001	g0001	AMR	PEL	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG02015	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG02040	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG02055	hp1	a0001	c0001	t0001	g0001	AFR	ACB	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG02071	hp1	a0001	c0001	t0002	g0001	EAS	KHV	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG02074	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG02129	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG02132	hp1	a0001	c0001	t0002	g0001	EAS	KHV	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG02135	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG02258	hp1	a0001	c0001	t0001	g0001	AFR	ACB	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG02602	hp1	a0001	c0001	t0001	g0001	SAS	PJL	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG02698	hp1	a0001	c0001	t0004	g0001	SAS	PJL	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG02735	hp1	a0001	c0002	t0001	g0001	SAS	PJL	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG02895	hp1	a0001	c0001	t0001	g0001	AFR	GWD	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG03017	hp1	a0001	c0001	t0001	g0001	SAS	PJL	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG03098	hp1	a0001	c0001	t0001	g0001	AFR	MSL	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG03130	hp1	a0001	c0001	t0001	g0001	AFR	ESN	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG03139	hp1	a0001	c0001	t0001	g0001	AFR	ESN	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG03209	hp1	a0001	c0001	t0001	g0001	AFR	MSL	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG03225	hp1	a0001	c0001	t0005	g0001	AFR	MSL	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG03579	hp1	a0001	c0001	t0001	g0001	AFR	MSL	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG03688	hp1	a0001	c0001	t0001	g0001	SAS	STU	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG03942	hp1	a0001	c0001	t0001	g0001	SAS	BEB	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG04199	hp1	a0001	c0001	t0001	g0001	SAS	STU	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG04228	hp1	a0001	c0001	t0001	g0001	SAS	STU	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA18522	hp1	a0001	c0001	t0001	g0001	AFR	YRI	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA18940	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA18944	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA18952	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA18953	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA18959	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA18960	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA18962	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA18966	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA18967	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA18977	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA18983	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA18984	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA18985	hp1	a0003	c0004	t0006	g0002	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA18986	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA18989	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA18990	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA18994	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA19000	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA19004	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA19005	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA19006	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA19009	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA19012	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA19055	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA19058	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA19060	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA19062	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA19063	hp1	a0001	c0001	t0007	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA19067	hp1	a0001	c0001	t0002	g0003	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA19068	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA19070	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA19072	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA19076	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA19079	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA19082	hp1	a0004	c0005	t0008	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA19085	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA19086	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA20752	hp1	a0001	c0001	t0002	g0001	EUR	TSI	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA20805	hp1	a0001	c0002	t0001	g0001	EUR	TSI	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA20905	hp1	a0001	c0002	t0001	g0001	SAS	GIH	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
HG02486	hp1	a0001	c0001	t0001	g0001	AFR	ACB	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902
NA18955	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CDY1_chrY_25617117_25629902	CDY1	chrY	25617117	25629902

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	pos
chrY:25622628	GA GA	G G	1	a0004 a0004	1	NA19082.hp1 NA19082.hp1	frameshift_variant	HIGH	c.192delA c.192delA	p.Lys64fs p.Lys64fs	CDY1	ENSG00000172288.8	transcript	ENST00000306609.5	protein_coding	1/2	518/2366	192/1665	64/554	INFO_REALIGN_3_PRIME	chrY	25622628
chrY:25622917	CT CT	C C	1	a0004 a0004	1	NA19082.hp1 NA19082.hp1	frameshift_variant	HIGH	c.477delT c.477delT	p.Glu160fs p.Glu160fs	CDY1	ENSG00000172288.8	transcript	ENST00000306609.5	protein_coding	1/2	803/2366	477/1665	159/554	INFO_REALIGN_3_PRIME	chrY	25622917
chrY:25623461	T T	TC TC	1	a0004 a0004	1	NA19082.hp1 NA19082.hp1	frameshift_variant	HIGH	c.1020dupC c.1020dupC	p.Phe341fs p.Phe341fs	CDY1	ENSG00000172288.8	transcript	ENST00000306609.5	protein_coding	1/2	1347/2366	1021/1665	341/554	INFO_REALIGN_3_PRIME	chrY	25623461
chrY:25623510	TA TA	T T	1	a0004 a0004	1	NA19082.hp1 NA19082.hp1	frameshift_variant	HIGH	c.1070delA c.1070delA	p.Asn357fs p.Asn357fs	CDY1	ENSG00000172288.8	transcript	ENST00000306609.5	protein_coding	1/2	1396/2366	1070/1665	357/554	INFO_REALIGN_3_PRIME	chrY	25623510
chrY:25623626	GTGCATCC others(10): Show GTGCATCCATCCTGCCTC	G G	1	a0003 a0003	1	NA18985.hp1 NA18985.hp1	frameshift_variant	HIGH	c.1186_1202delGCATCC others(11): Show c.1186_1202delGCATCCATCCTGCCTCT	p.Ala396fs p.Ala396fs	CDY1	ENSG00000172288.8	transcript	ENST00000306609.5	protein_coding	1/2	1512/2366	1186/1665	396/554	INFO_REALIGN_3_PRIME	chrY	25623626
chrY:25623722	G G	GT GT	1	a0004 a0004	1	NA19082.hp1 NA19082.hp1	frameshift_variant	HIGH	c.1282dupT c.1282dupT	p.Ser428fs p.Ser428fs	CDY1	ENSG00000172288.8	transcript	ENST00000306609.5	protein_coding	1/2	1609/2366	1283/1665	428/554	INFO_REALIGN_3_PRIME	chrY	25623722
chrY:25623931	G G	A A	1	a0002 a0002	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.1489G>A c.1489G>A	p.Val497Ile p.Val497Ile	CDY1	ENSG00000172288.8	transcript	ENST00000306609.5	protein_coding	1/2	1815/2366	1489/1665	497/554		chrY	25623931
chrY:25624473	TA TA	T T	1	a0004 a0004	1	NA19082.hp1 NA19082.hp1	frameshift_variant	HIGH	c.1614delA c.1614delA	p.Ala539fs p.Ala539fs	CDY1	ENSG00000172288.8	transcript	ENST00000306609.5	protein_coding	2/2	1940/2366	1614/1665	538/554	INFO_REALIGN_3_PRIME	chrY	25624473

view	chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrY:25622823	C C	T T	1	a0001c0002 a0001c0002	8	HG01069.hp1 HG01255.hp1 HG01256.hp1 others(5): Show HG01069.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 HG02735.hp1 NA20805.hp1 NA20905.hp1	synonymous_variant	LOW	c.381C>T c.381C>T	p.Ser127Ser p.Ser127Ser	CDY1	ENSG00000172288.8	transcript	ENST00000306609.5	protein_coding	1/2	707/2366	381/1665	127/554			chrY	25622823

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chrY:25622255	G G	A A	1	a0001c0002t0003 a0001c0002t0003	1	HG01069.hp1 HG01069.hp1	5_prime_UTR_variant	MODIFIER	c.-188G>A c.-188G>A	CDY1	ENSG00000172288.8	transcript	ENST00000306609.5	protein_coding	1/2	188		chrY	25622255
chrY:25622265	G G	C C	1	a0001c0001t0004 a0001c0001t0004	1	HG02698.hp1 HG02698.hp1	5_prime_UTR_variant	MODIFIER	c.-178G>C c.-178G>C	CDY1	ENSG00000172288.8	transcript	ENST00000306609.5	protein_coding	1/2	178		chrY	25622265
chrY:25622359	C C	T T	8	a0001c0001t0001 a0001c0001t0004 a0001c0001t0007 others(5): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0007 a0001c0002t0001 a0001c0002t0003 a0002c0003t0001 a0003c0004t0006 a0004c0005t0008	72	HG00140.hp1 HG00642.hp1 HG00673.hp1 others(69): Show HG00140.hp1 HG00642.hp1 HG00673.hp1 HG01069.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 HG01928.hp1 HG01952.hp1 HG02015.hp1 HG02040.hp1 HG02055.hp1 HG02074.hp1 HG02129.hp1 HG02135.hp1 HG02258.hp1 HG02486.hp1 HG02602.hp1 HG02698.hp1 HG02735.hp1 HG02895.hp1 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03579.hp1 HG03688.hp1 HG03710.hp1 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04228.hp1 NA18522.hp1 NA18940.hp1 NA18944.hp1 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18962.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18977.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19012.hp1 NA19055.hp1 NA19058.hp1 NA19062.hp1 NA19063.hp1 NA19068.hp1 NA19070.hp1 NA19082.hp1 NA19085.hp1 NA19086.hp1 NA20805.hp1 NA20905.hp1	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-84C>T c.-84C>T	CDY1	ENSG00000172288.8	transcript	ENST00000306609.5	protein_coding	1/2			chrY	25622359
chrY:25624527	A A	AC AC	1	a0003c0004t0006 a0003c0004t0006	1	NA18985.hp1 NA18985.hp1	3_prime_UTR_variant	MODIFIER	c.1dupC c.1dupC	CDY1	ENSG00000172288.8	transcript	ENST00000306609.5	protein_coding	2/2	2	INFO_REALIGN_3_PRIME	chrY	25624527
chrY:25624541	CA CA	C C	1	a0004c0005t0008 a0004c0005t0008	1	NA19082.hp1 NA19082.hp1	3_prime_UTR_variant	MODIFIER	c.17delA c.17delA	CDY1	ENSG00000172288.8	transcript	ENST00000306609.5	protein_coding	2/2	17	INFO_REALIGN_3_PRIME	chrY	25624541
chrY:25624686	TA TA	T T	1	a0003c0004t0006 a0003c0004t0006	1	NA18985.hp1 NA18985.hp1	3_prime_UTR_variant	MODIFIER	c.162delA c.162delA	CDY1	ENSG00000172288.8	transcript	ENST00000306609.5	protein_coding	2/2	162	INFO_REALIGN_3_PRIME	chrY	25624686
chrY:25624733	TA TA	T T	1	a0001c0001t0007 a0001c0001t0007	1	NA19063.hp1 NA19063.hp1	3_prime_UTR_variant	MODIFIER	c.209delA c.209delA	CDY1	ENSG00000172288.8	transcript	ENST00000306609.5	protein_coding	2/2	209	INFO_REALIGN_3_PRIME	chrY	25624733
chrY:25624753	C C	G G	1	a0001c0001t0005 a0001c0001t0005	1	HG03225.hp1 HG03225.hp1	3_prime_UTR_variant	MODIFIER	c.226C>G c.226C>G	CDY1	ENSG00000172288.8	transcript	ENST00000306609.5	protein_coding	2/2	226		chrY	25624753
chrY:25624827	A A	T T	1	a0003c0004t0006 a0003c0004t0006	1	NA18985.hp1 NA18985.hp1	3_prime_UTR_variant	MODIFIER	c.300A>T c.300A>T	CDY1	ENSG00000172288.8	transcript	ENST00000306609.5	protein_coding	2/2	300		chrY	25624827
chrY:25624828	C C	A A	1	a0003c0004t0006 a0003c0004t0006	1	NA18985.hp1 NA18985.hp1	3_prime_UTR_variant	MODIFIER	c.301C>A c.301C>A	CDY1	ENSG00000172288.8	transcript	ENST00000306609.5	protein_coding	2/2	301		chrY	25624828
chrY:25624829	T T	C C	1	a0003c0004t0006 a0003c0004t0006	1	NA18985.hp1 NA18985.hp1	3_prime_UTR_variant	MODIFIER	c.302T>C c.302T>C	CDY1	ENSG00000172288.8	transcript	ENST00000306609.5	protein_coding	2/2	302		chrY	25624829
chrY:25624853	G G	GT GT	1	a0003c0004t0006 a0003c0004t0006	1	NA18985.hp1 NA18985.hp1	3_prime_UTR_variant	MODIFIER	c.328dupT c.328dupT	CDY1	ENSG00000172288.8	transcript	ENST00000306609.5	protein_coding	2/2	329	INFO_REALIGN_3_PRIME	chrY	25624853

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrY:25624059	G G	GT GT	1	a0001c0001t0002g0003 a0001c0001t0002g0003	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.1592+29dupT c.1592+29dupT	CDY1	ENSG00000172288.8	transcript	ENST00000306609.5	protein_coding	1/1	INFO_REALIGN_3_PRIME	chrY	25624059
chrY:25624392	A A	AT AT	1	a0003c0004t0006g0002 a0003c0004t0006g0002	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.1593-61dupT c.1593-61dupT	CDY1	ENSG00000172288.8	transcript	ENST00000306609.5	protein_coding	1/1	INFO_REALIGN_3_PRIME	chrY	25624392
chrY:25624430	A A	AT AT	1	a0003c0004t0006g0002 a0003c0004t0006g0002	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.1593-19dupT c.1593-19dupT	CDY1	ENSG00000172288.8	transcript	ENST00000306609.5	protein_coding	1/1	INFO_REALIGN_3_PRIME	chrY	25624430

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CDY1_chrY_25617117_25629902 Genic Haplotype Structure on iGV

Translation Multiple Alignment View

Gene Summary (with MANE)

Amino acid(protein) Level Haplotype Info (Total: 4)

Coding Level Haplotype Info (Total: 5)

Transcript Level Haplotype Info (Total: 10)

Genebody Level Haplotype Info (Total: 11)

Haplotype Details by Sample (Haploid Level) (Total: 92)

Amino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 8)

Coding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 1)

Transcript Level Haplotype Variants (Exon) (Total: 12)

Genebody Level Haplotype Variants (Intron) (Total: 3)

Annotation (Repeats)

Annotation (SNP Array)