JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CEACAM18_chr19_51473539_51496301	0/0	a0016	384	1	0	1	0	0	0	copy fasta	CEACAM18	chr19	51473539	51496301
CEACAM19_chr19_44666482_44689355	1/1	a0001	299	370	81	68	155	15	49	copy fasta	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	a0002	299	18	13	3	0	1	1	copy fasta	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	a0003	299	1	0	1	0	0	0	copy fasta	CEACAM19	chr19	44666482	44689355
CEACAM19_chr19_44666482_44689355	0/0	a0004	299	1	0	0	1	0	0	copy fasta	CEACAM19	chr19	44666482	44689355
CEACAM1_chr19_42502306_42533481	1/1	a0001	526	249	51	70	78	12	36	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	a0002	526	39	35	4	0	0	0	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	a0003	526	1	0	0	1	0	0	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM1_chr19_42502306_42533481	0/0	a0004	526	1	0	0	1	0	0	copy fasta	CEACAM1	chr19	42502306	42533481
CEACAM20_chr19_44501159_44534675	0/0	a0001	596	70	21	13	32	1	3	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0002	596	57	1	14	22	2	18	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0003	596	57	6	6	41	0	4	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0004	596	54	3	3	43	3	2	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0005	596	44	6	13	20	1	4	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0006	596	26	18	0	8	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0007	596	24	5	3	14	1	1	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0008	596	23	3	10	0	6	4	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/1	a0009	596	22	2	4	13	1	1	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0010	596	6	5	1	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0011	596	5	4	1	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0012	559	5	0	0	5	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0013	596	4	4	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0014	596	4	2	0	0	0	2	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0015	596	4	4	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0016	596	3	2	0	0	1	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0017	596	3	0	3	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0018	596	3	3	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0019	559	3	0	0	3	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0020	596	3	1	1	1	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0021	596	2	0	1	1	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0022	596	2	1	1	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0023	596	2	2	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0024	596	1	0	0	0	0	1	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0025	596	1	1	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	1/0	a0026	596	1	0	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0027	596	1	0	0	1	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0028	596	1	1	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0029	596	1	0	0	0	0	1	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0030	596	1	0	0	0	0	1	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0031	596	1	0	0	1	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0032	596	1	1	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0033	596	1	1	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0034	596	1	0	0	1	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM20_chr19_44501159_44534675	0/0	a0035	596	1	1	0	0	0	0	copy fasta	CEACAM20	chr19	44501159	44534675
CEACAM21_chr19_41571166_41591844	0/1	a0001	293	175	5	39	89	12	29	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	a0002	293	96	63	13	9	4	7	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	a0003	294	86	2	2	75	0	7	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	a0004	293	24	22	2	0	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	a0005	294	4	0	0	4	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	a0006	6	1	0	0	1	0	0	copy fasta	CEACAM21	chr19	41571166	41591844