JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CEACAM21_chr19_41571166_41591844	0/0	a0007	293	1	0	0	0	0	1	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	a0008	294	1	1	0	0	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	a0009	293	1	1	0	0	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	a0010	293	1	1	0	0	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	a0011	293	1	1	0	0	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	a0012	293	1	1	0	0	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM21_chr19_41571166_41591844	0/0	a0013	293	1	1	0	0	0	0	copy fasta	CEACAM21	chr19	41571166	41591844
CEACAM3_chr19_41791587_41816554	1/1	a0001	252	396	64	74	196	16	44	copy fasta	CEACAM3	chr19	41791587	41816554
CEACAM3_chr19_41791587_41816554	0/0	a0002	252	10	9	1	0	0	0	copy fasta	CEACAM3	chr19	41791587	41816554
CEACAM3_chr19_41791587_41816554	0/0	a0003	252	8	7	1	0	0	0	copy fasta	CEACAM3	chr19	41791587	41816554
CEACAM3_chr19_41791587_41816554	0/0	a0004	252	2	2	0	0	0	0	copy fasta	CEACAM3	chr19	41791587	41816554
CEACAM4_chr19_41614015_41632074	0/1	a0001	244	285	45	31	167	11	30	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	a0002	244	105	21	33	33	7	11	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	a0003	244	43	33	7	0	0	3	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	a0004	244	2	0	0	0	0	2	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	a0005	244	1	1	0	0	0	0	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM4_chr19_41614015_41632074	0/0	a0006	244	1	0	1	0	0	0	copy fasta	CEACAM4	chr19	41614015	41632074
CEACAM5_chr19_41703626_41735433	1/1	a0001	702	242	35	47	119	8	31	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	a0002	702	45	0	12	24	5	4	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	a0003	702	16	7	5	0	2	2	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	a0004	702	13	13	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	a0005	702	12	0	7	0	1	4	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	a0006	702	11	10	1	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	a0007	702	7	6	1	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	a0008	702	5	5	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	a0009	702	4	4	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	a0010	702	3	0	1	0	2	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	a0011	702	3	3	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	a0012	702	2	0	0	2	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	a0013	702	2	2	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	a0014	702	2	1	1	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	a0015	702	1	0	0	0	0	1	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	a0016	702	1	1	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	a0017	702	1	1	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	a0018	702	1	0	0	1	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	a0019	702	1	0	1	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	a0020	702	1	1	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM5_chr19_41703626_41735433	0/0	a0021	702	1	1	0	0	0	0	copy fasta	CEACAM5	chr19	41703626	41735433
CEACAM6_chr19_41750530_41777211	1/0	a0001	344	237	53	38	119	3	23	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/1	a0002	344	173	15	40	88	10	19	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	a0003	344	10	10	0	0	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	a0004	344	1	0	0	1	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	a0005	344	1	1	0	0	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	a0006	344	1	1	0	0	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	a0007	344	1	1	0	0	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	a0008	344	1	0	0	0	1	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM6_chr19_41750530_41777211	0/0	a0009	344	1	1	0	0	0	0	copy fasta	CEACAM6	chr19	41750530	41777211
CEACAM7_chr19_41668303_41693270	1/0	a0001	265	231	59	38	99	5	29	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/1	a0002	265	162	14	40	79	11	17	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	a0003	265	6	6	0	0	0	0	copy fasta	CEACAM7	chr19	41668303	41693270