JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CEACAM7_chr19_41668303_41693270	0/0	a0004	265	5	5	0	0	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	a0005	265	3	3	0	0	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	a0006	265	2	0	0	2	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	a0007	265	1	0	0	1	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	a0008	265	1	0	0	1	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM7_chr19_41668303_41693270	0/0	a0009	265	1	1	0	0	0	0	copy fasta	CEACAM7	chr19	41668303	41693270
CEACAM8_chr19_42575243_42599924	1/1	a0001	349	233	56	54	70	17	34	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	a0002	349	52	7	21	15	1	8	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	a0003	349	23	22	1	0	0	0	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	a0004	349	1	1	0	0	0	0	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	a0005	349	1	1	0	0	0	0	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	a0006	349	1	0	1	0	0	0	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	a0007	349	1	1	0	0	0	0	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	a0008	349	1	0	0	1	0	0	copy fasta	CEACAM8	chr19	42575243	42599924
CEACAM8_chr19_42575243_42599924	0/0	a0009	349	1	0	1	0	0	0	copy fasta	CEACAM8	chr19	42575243	42599924
CEBPA_chr19_33294934_33307534	1/1	a0001	358	400	90	72	170	16	50	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	a0002	360	44	7	5	30	2	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	a0003	362	1	0	0	1	0	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	a0004	360	1	0	1	0	0	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	a0005	358	1	0	0	1	0	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	a0006	358	1	1	0	0	0	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	a0007	358	1	0	0	1	0	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPA_chr19_33294934_33307534	0/0	a0008	358	1	0	0	1	0	0	copy fasta	CEBPA	chr19	33294934	33307534
CEBPB_chr20_50185830_50197668	1/1	a0001	345	380	91	80	148	15	44	copy fasta	CEBPB	chr20	50185830	50197668
CEBPB_chr20_50185830_50197668	0/0	a0002	345	1	0	0	1	0	0	copy fasta	CEBPB	chr20	50185830	50197668
CEBPB_chr20_50185830_50197668	0/0	a0003	345	1	0	0	1	0	0	copy fasta	CEBPB	chr20	50185830	50197668
CEBPB_chr20_50185830_50197668	0/0	a0004	345	1	1	0	0	0	0	copy fasta	CEBPB	chr20	50185830	50197668
CEBPB_chr20_50185830_50197668	0/0	a0005	345	1	0	0	0	1	0	copy fasta	CEBPB	chr20	50185830	50197668
CEBPD_chr8_47731913_47743164	1/1	a0001	269	310	85	57	116	14	36	copy fasta	CEBPD	chr8	47731913	47743164
CEBPD_chr8_47731913_47743164	0/0	a0002	269	5	4	1	0	0	0	copy fasta	CEBPD	chr8	47731913	47743164
CEBPD_chr8_47731913_47743164	0/0	a0003	269	1	1	0	0	0	0	copy fasta	CEBPD	chr8	47731913	47743164
CEBPE_chr14_23112306_23124255	1/1	a0001	281	456	95	77	220	14	48	copy fasta	CEBPE	chr14	23112306	23124255
CEBPE_chr14_23112306_23124255	0/0	a0002	281	1	1	0	0	0	0	copy fasta	CEBPE	chr14	23112306	23124255
CEBPE_chr14_23112306_23124255	0/0	a0003	281	1	0	1	0	0	0	copy fasta	CEBPE	chr14	23112306	23124255
CEBPG_chr19_33368709_33387686	1/1	a0001	150	436	96	72	208	16	42	copy fasta	CEBPG	chr19	33368709	33387686
CEBPZOS_chr2_37191496_37209743	1/1	a0001	80	466	94	76	234	16	44	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZ_chr2_37196612_37236596	0/1	a0001	1054	322	86	54	141	11	29	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	a0002	1054	86	1	13	69	0	3	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	1/0	a0003	1054	12	0	5	0	1	5	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	a0004	1053	6	0	2	0	2	2	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	a0005	1054	3	2	1	0	0	0	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	a0006	1054	2	2	0	0	0	0	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	a0007	1054	1	1	0	0	0	0	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	a0008	1054	1	0	1	0	0	0	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	a0009	1054	1	1	0	0	0	0	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	a0010	1054	1	1	0	0	0	0	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	a0011	1054	1	0	0	0	0	1	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	a0012	1054	1	0	0	1	0	0	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/0	a0013	1054	1	0	0	1	0	0	copy fasta	CEBPZ	chr2	37196612	37236596
CECR2_chr22_17364460_17563151	1/1	a0001	1464	213	65	45	65	10	26	copy fasta	CECR2	chr22	17364460	17563151