JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CECR2_chr22_17364460_17563151	0/0	a0002	1464	74	11	15	45	3	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	a0003	1464	12	2	6	3	1	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	a0004	1464	10	10	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	a0005	1464	2	0	0	2	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	a0006	1464	2	0	0	0	0	2	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	a0007	1464	1	0	0	1	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	a0008	1464	1	0	1	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	a0009	1464	1	0	0	0	0	1	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	a0010	1464	1	0	0	1	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	a0011	1464	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	a0012	1464	1	0	0	0	0	1	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	a0013	1464	1	0	1	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	a0014	1464	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	a0015	1464	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	a0016	1464	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	a0017	1464	1	0	0	1	0	0	copy fasta	CECR2	chr22	17364460	17563151
CELA1_chr12_51323442_51351679	1/1	a0001	258	189	48	34	76	6	23	copy fasta	CELA1	chr12	51323442	51351679
CELA1_chr12_51323442_51351679	0/0	a0002	18	176	35	37	85	5	14	copy fasta	CELA1	chr12	51323442	51351679
CELA1_chr12_51323442_51351679	0/0	a0003	18	35	6	3	21	3	2	copy fasta	CELA1	chr12	51323442	51351679
CELA1_chr12_51323442_51351679	0/0	a0004	258	2	2	0	0	0	0	copy fasta	CELA1	chr12	51323442	51351679
CELA1_chr12_51323442_51351679	0/0	a0005	258	1	0	0	0	0	1	copy fasta	CELA1	chr12	51323442	51351679
CELA1_chr12_51323442_51351679	0/0	a0006	258	1	0	1	0	0	0	copy fasta	CELA1	chr12	51323442	51351679
CELA1_chr12_51323442_51351679	0/0	a0007	258	1	0	1	0	0	0	copy fasta	CELA1	chr12	51323442	51351679
CELA1_chr12_51323442_51351679	0/0	a0008	258	1	1	0	0	0	0	copy fasta	CELA1	chr12	51323442	51351679
CELA2A_chr1_15451732_15477091	0/0	a0000	0	2	0	0	2	0	0	copy fasta	CELA2A	chr1	15451732	15477091
CELA2A_chr1_15451732_15477091	1/1	a0001	269	418	92	85	181	18	40	copy fasta	CELA2A	chr1	15451732	15477091
CELA2A_chr1_15451732_15477091	0/0	a0002	269	5	0	0	3	0	2	copy fasta	CELA2A	chr1	15451732	15477091
CELA2A_chr1_15451732_15477091	0/0	a0003	269	2	0	0	2	0	0	copy fasta	CELA2A	chr1	15451732	15477091
CELA2A_chr1_15451732_15477091	0/0	a0004	269	1	0	1	0	0	0	copy fasta	CELA2A	chr1	15451732	15477091
CELA2A_chr1_15451732_15477091	0/0	a0005	269	1	0	0	1	0	0	copy fasta	CELA2A	chr1	15451732	15477091
CELA2A_chr1_15451732_15477091	0/0	a0006	269	1	0	0	1	0	0	copy fasta	CELA2A	chr1	15451732	15477091
CELA2B_chr1_15471104_15496395	0/1	a0001	269	245	55	52	89	11	37	copy fasta	CELA2B	chr1	15471104	15496395
CELA2B_chr1_15471104_15496395	0/0	a0002	269	152	32	26	86	3	5	copy fasta	CELA2B	chr1	15471104	15496395
CELA2B_chr1_15471104_15496395	1/0	a0003	269	6	5	0	0	0	0	copy fasta	CELA2B	chr1	15471104	15496395
CELA2B_chr1_15471104_15496395	0/0	a0004	269	6	0	3	3	0	0	copy fasta	CELA2B	chr1	15471104	15496395
CELA2B_chr1_15471104_15496395	0/0	a0005	269	2	0	0	0	2	0	copy fasta	CELA2B	chr1	15471104	15496395
CELA2B_chr1_15471104_15496395	0/0	a0006	269	2	0	1	1	0	0	copy fasta	CELA2B	chr1	15471104	15496395
CELA2B_chr1_15471104_15496395	0/0	a0007	269	1	0	0	1	0	0	copy fasta	CELA2B	chr1	15471104	15496395
CELA3A_chr1_21996657_22017542	0/1	a0001	270	187	15	52	69	15	35	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	a0002	270	107	42	11	49	0	5	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	a0003	270	93	18	11	57	3	4	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	a0004	270	22	11	2	9	0	0	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	a0005	270	2	2	0	0	0	0	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	a0006	270	2	1	0	1	0	0	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	a0007	270	1	1	0	0	0	0	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	a0008	270	1	0	0	1	0	0	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	a0009	270	1	0	0	0	0	1	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	a0010	270	1	0	0	0	0	1	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	a0011	270	1	1	0	0	0	0	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	a0012	270	1	1	0	0	0	0	copy fasta	CELA3A	chr1	21996657	22017542