JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CELA3B_chr1_21972022_21994354	0/0	a0000	0	7	4	1	0	2	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/1	a0001	270	322	61	73	133	15	39	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	1/0	a0002	270	86	24	2	55	1	3	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	a0003	270	9	0	0	6	0	3	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	a0004	270	4	1	3	0	0	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	a0005	270	3	0	2	0	0	1	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	a0006	270	3	3	0	0	0	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	a0007	270	2	0	0	1	0	1	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	a0008	270	2	2	0	0	0	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	a0009	270	1	1	0	0	0	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	a0010	270	1	0	0	1	0	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	a0011	270	1	0	0	0	0	1	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	a0012	266	1	1	0	0	0	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	a0013	270	1	0	1	0	0	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	a0014	270	1	1	0	0	0	0	copy fasta	CELA3B	chr1	21972022	21994354
CELF1_chr11_47460937_47558132	1/1	a0001	514	340	84	56	148	10	40	copy fasta	CELF1	chr11	47460937	47558132
CELF2_chr10_11012872_11341675	1/1	a0001	521	193	76	44	35	10	26	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	a0002	521	1	0	0	1	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF3_chr1_151695058_151721803	1/1	a0001	465	425	90	66	203	16	48	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	a0002	468	3	3	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	a0003	466	3	3	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	a0004	465	1	0	0	1	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF4_chr18_37238040_37570798	1/1	a0001	486	184	74	36	42	4	26	copy fasta	CELF4	chr18	37238040	37570798
CELF5_chr19_3219661_3302076	1/1	a0001	485	261	71	62	74	10	42	copy fasta	CELF5	chr19	3219661	3302076
CELF5_chr19_3219661_3302076	0/0	a0002	485	1	1	0	0	0	0	copy fasta	CELF5	chr19	3219661	3302076
CELF6_chr15_72279727_72325157	1/1	a0001	481	297	85	48	136	8	18	copy fasta	CELF6	chr15	72279727	72325157
CELF6_chr15_72279727_72325157	0/0	a0002	481	1	1	0	0	0	0	copy fasta	CELF6	chr15	72279727	72325157
CELF6_chr15_72279727_72325157	0/0	a0003	481	1	1	0	0	0	0	copy fasta	CELF6	chr15	72279727	72325157
CELF6_chr15_72279727_72325157	0/0	a0004	481	1	1	0	0	0	0	copy fasta	CELF6	chr15	72279727	72325157
CELSR1_chr22_46356174_46542620	0/0	a0001	3019	44	3	10	18	5	8	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0002	3019	3	3	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0003	3019	3	1	1	0	1	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0004	3019	3	0	0	1	0	2	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0005	3019	2	2	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0006	3019	2	0	2	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0007	3019	2	1	1	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/1	a0008	3019	2	0	1	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0009	3019	2	0	2	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0010	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0011	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	1/0	a0012	3019	1	0	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0013	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0014	3019	1	0	0	0	0	1	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0015	3019	1	0	1	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0016	3019	1	0	0	0	0	1	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0017	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0018	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0019	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0020	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0021	3019	1	0	1	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620