JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CELSR1_chr22_46356174_46542620	0/0	a0022	3019	1	0	0	1	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0023	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0024	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0025	3019	1	0	0	0	1	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0026	2888	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0027	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0028	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0029	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0030	3019	1	0	0	0	1	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0031	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0032	3015	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0033	3019	1	0	1	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0034	3019	1	0	1	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0035	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0036	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0037	3019	1	0	1	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0038	3026	1	0	1	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0039	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0040	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0041	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0042	3019	1	0	1	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0043	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0044	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0045	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0046	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0047	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0048	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0049	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	a0050	3019	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR2_chr1_109244539_109280751	0/1	a0001	2924	137	20	32	62	8	14	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	1/0	a0002	2923	113	30	10	53	2	17	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0003	2924	16	2	8	0	4	2	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0004	2923	15	11	1	0	2	1	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0005	2924	9	0	0	8	0	1	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0006	2923	7	0	5	2	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0007	2924	7	6	1	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0008	2923	6	6	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0009	2923	4	4	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0010	2924	4	0	1	0	0	3	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0011	2923	3	0	0	3	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0012	2923	3	3	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0013	2923	2	2	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0014	2923	2	2	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0015	2924	2	2	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0016	2924	2	0	0	2	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0017	2924	2	2	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0018	2924	2	2	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0019	2923	1	0	0	0	1	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0020	2923	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0021	2923	1	0	0	0	0	1	copy fasta	CELSR2	chr1	109244539	109280751