Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ACVR2A_chr2_147840029_147935822	0/0	a0002	513	1	0	0	1	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	a0003	513	1	0	0	1	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2B_chr3_38448890_38498142	1/1	a0001	512	408	88	68	194	12	44	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	a0002	512	2	2	0	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVRL1_chr12_51902504_51928361	1/1	a0001	503	435	95	76	203	14	45	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	a0002	503	1	0	0	0	0	1	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	a0003	503	1	0	0	1	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	a0004	503	1	1	0	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACY1_chr3_51978535_51994197	1/1	a0001	408	328	84	61	123	14	44	copy fasta	ACY1	chr3	51978535	51994197
ACY1_chr3_51978535_51994197	0/0	a0002	408	3	3	0	0	0	0	copy fasta	ACY1	chr3	51978535	51994197
ACY1_chr3_51978535_51994197	0/0	a0003	408	2	0	0	2	0	0	copy fasta	ACY1	chr3	51978535	51994197
ACY1_chr3_51978535_51994197	0/0	a0004	408	1	0	0	1	0	0	copy fasta	ACY1	chr3	51978535	51994197
ACY1_chr3_51978535_51994197	0/0	a0005	408	1	0	0	1	0	0	copy fasta	ACY1	chr3	51978535	51994197
ACY1_chr3_51978535_51994197	0/0	a0006	408	1	0	0	1	0	0	copy fasta	ACY1	chr3	51978535	51994197
ACY1_chr3_51978535_51994197	0/0	a0007	408	1	1	0	0	0	0	copy fasta	ACY1	chr3	51978535	51994197
ACY1_chr3_51978535_51994197	0/0	a0008	408	1	0	1	0	0	0	copy fasta	ACY1	chr3	51978535	51994197
ACY3_chr11_67637555_67655730	0/1	a0001	319	267	45	50	108	18	45	copy fasta	ACY3	chr11	67637555	67655730
ACY3_chr11_67637555_67655730	1/0	a0002	319	119	51	16	48	0	3	copy fasta	ACY3	chr11	67637555	67655730
ACY3_chr11_67637555_67655730	0/0	a0003	319	9	0	0	9	0	0	copy fasta	ACY3	chr11	67637555	67655730
ACY3_chr11_67637555_67655730	0/0	a0004	229	1	0	0	1	0	0	copy fasta	ACY3	chr11	67637555	67655730
ACYP1_chr14_75048243_75069024	1/1	a0001	99	322	90	62	108	14	46	copy fasta	ACYP1	chr14	75048243	75069024
ACYP2_chr2_53966113_54310300	1/1	a0001	172	255	82	46	89	15	21	copy fasta	ACYP2	chr2	53966113	54310300
ACYP2_chr2_53966113_54310300	0/0	a0002	73	14	0	6	4	1	3	copy fasta	ACYP2	chr2	53966113	54310300
ACYP2_chr2_53966113_54310300	0/0	a0003	172	2	2	0	0	0	0	copy fasta	ACYP2	chr2	53966113	54310300
ACYP2_chr2_53966113_54310300	0/0	a0004	172	1	0	0	1	0	0	copy fasta	ACYP2	chr2	53966113	54310300
ADA2_chr22_17173790_17224435	1/1	a0001	511	283	42	55	136	9	39	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	a0002	511	121	52	23	35	5	6	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	a0003	511	1	1	0	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	a0004	511	1	0	0	0	0	1	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	a0005	327	1	1	0	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	a0006	511	1	0	0	1	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADAD1_chr4_122374011_122434784	1/1	a0001	576	371	94	63	165	18	29	copy fasta	ADAD1	chr4	122374011	122434784
ADAD1_chr4_122374011_122434784	0/0	a0002	576	2	0	0	2	0	0	copy fasta	ADAD1	chr4	122374011	122434784
ADAD1_chr4_122374011_122434784	0/0	a0003	576	1	0	1	0	0	0	copy fasta	ADAD1	chr4	122374011	122434784
ADAD1_chr4_122374011_122434784	0/0	a0004	576	1	0	0	0	0	1	copy fasta	ADAD1	chr4	122374011	122434784
ADAD1_chr4_122374011_122434784	0/0	a0005	576	1	0	0	1	0	0	copy fasta	ADAD1	chr4	122374011	122434784
ADAD2_chr16_84186157_84202166	0/1	a0001	583	189	33	37	95	5	18	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	1/0	a0002	583	139	17	29	67	5	20	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	a0003	583	112	40	14	47	3	8	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	a0004	583	6	1	1	0	4	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	a0005	583	5	3	1	0	1	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	a0006	583	3	3	0	0	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	a0007	583	2	1	1	0	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	a0008	583	2	0	0	1	0	1	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	a0009	583	2	0	0	2	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	a0010	583	1	1	0	0	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	a0011	583	1	0	0	1	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	a0012	583	1	0	0	0	0	1	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	a0013	583	1	0	0	1	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	a0014	583	1	0	0	1	0	0	copy fasta	ADAD2	chr16	84186157	84202166