JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CELSR2_chr1_109244539_109280751	0/0	a0022	2923	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0023	2923	1	0	0	1	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0024	2923	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0025	2923	1	0	0	1	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0026	2923	1	1	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0027	2923	1	0	1	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0028	2923	1	0	0	1	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0029	2924	1	0	1	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0030	2924	1	0	0	0	1	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0031	2924	1	0	1	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0032	2924	1	0	0	1	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0033	2924	1	0	0	1	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0034	2924	1	0	0	0	0	1	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0035	2924	1	0	1	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0036	2924	1	0	0	1	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0037	2924	1	0	0	1	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	a0038	2924	1	0	0	1	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR3_chr3_48631463_48667886	1/1	a0001	3312	108	37	19	40	7	3	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	a0002	3312	43	9	8	21	3	2	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	a0003	3312	26	26	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	a0004	3312	4	4	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	a0005	3312	4	0	4	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	a0006	3312	3	0	0	2	0	1	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	a0007	3312	2	2	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	a0008	3312	1	1	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	a0009	3312	1	1	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	a0010	3312	1	0	0	1	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	a0011	3312	1	0	1	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	a0012	3312	1	1	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	a0013	3312	1	0	0	1	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	a0014	3312	1	0	0	0	0	1	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	a0015	3312	1	0	0	1	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	a0016	3312	1	1	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	a0017	3312	1	1	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	a0018	3312	1	1	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	a0019	3312	1	1	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	a0020	3312	1	1	0	0	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	a0021	3312	1	0	0	0	0	1	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	a0022	3312	1	0	0	1	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CELSR3_chr3_48631463_48667886	0/0	a0023	3312	1	0	0	1	0	0	copy fasta	CELSR3	chr3	48631463	48667886
CEL_chr9_133056981_133076861	0/0	a0001	597	43	6	13	20	0	4	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/1	a0002	674	42	8	8	21	1	3	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0003	742	34	8	4	19	2	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0004	663	32	8	11	10	1	2	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0005	608	28	5	7	12	0	4	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0006	641	24	4	2	16	0	2	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0007	630	22	4	4	10	1	3	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0008	619	20	4	2	12	0	2	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0009	731	20	7	4	5	3	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0010	652	16	0	6	7	1	2	copy fasta	CEL	chr9	133056981	133076861