JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CEL_chr9_133056981_133076861	0/0	a0011	742	14	1	3	9	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0012	685	12	0	3	8	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0013	663	10	4	0	6	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0014	652	8	1	1	5	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0015	720	6	2	1	3	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0016	685	6	2	2	0	1	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	1/0	a0017	753	6	0	1	4	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0018	674	4	1	1	2	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0019	665	3	3	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0020	709	3	2	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0021	669	3	0	0	3	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0022	674	3	1	1	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0023	685	3	0	0	2	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0024	720	3	0	0	1	1	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0025	674	2	0	0	0	0	2	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0026	670	2	0	1	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0027	696	2	0	1	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0028	698	2	0	0	2	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0029	720	2	0	2	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0030	597	2	2	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0031	191	1	0	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0032	221	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0033	621	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0034	630	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0035	641	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0036	720	1	0	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0037	663	1	0	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0038	674	1	0	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0039	742	1	0	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0040	742	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0041	720	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0042	676	1	0	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0043	775	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0044	753	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0045	742	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0046	685	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0047	685	1	0	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0048	630	1	0	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0049	720	1	0	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0050	663	1	0	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0051	630	1	0	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0052	641	1	0	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0053	709	1	0	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0054	597	1	0	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0055	641	1	0	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0056	652	1	0	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0057	641	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0058	731	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0059	742	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0060	641	1	0	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861