JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CEND1_chr11_782115_795090	0/0	a0002	149	1	0	0	1	0	0	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	a0003	149	1	0	0	1	0	0	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	a0004	149	1	0	1	0	0	0	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	a0005	149	1	1	0	0	0	0	copy fasta	CEND1	chr11	782115	795090
CENPA_chr2_26781056_26799589	1/1	a0001	140	381	89	74	162	16	38	copy fasta	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	a0002	140	1	1	0	0	0	0	copy fasta	CENPA	chr2	26781056	26799589
CENPB_chr20_3778851_3791740	1/1	a0001	599	403	92	73	180	18	38	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	a0002	600	5	4	1	0	0	0	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	a0003	599	1	0	0	1	0	0	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	a0004	599	1	0	0	1	0	0	copy fasta	CENPB	chr20	3778851	3791740
CENPC_chr4_67463762_67550503	0/1	a0001	943	209	42	45	93	9	19	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	1/0	a0002	943	102	30	12	41	5	13	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	a0003	943	8	0	4	0	4	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	a0004	943	4	4	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	a0005	943	3	2	1	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	a0006	943	2	2	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	a0007	943	2	2	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	a0008	943	2	2	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	a0009	943	2	0	0	2	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	a0010	943	2	2	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	a0011	943	1	1	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	a0012	943	1	1	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPE_chr4_103100811_103203343	1/1	a0001	2701	169	54	20	72	5	16	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	a0002	2701	55	4	11	24	2	14	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	a0003	2701	49	1	11	32	2	3	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	a0004	2701	10	8	2	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	a0005	2701	7	0	7	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	a0006	2701	5	4	1	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	a0007	2701	4	3	1	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	a0008	2701	4	4	0	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	a0009	2701	3	3	0	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	a0010	2701	2	2	0	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	a0011	2701	1	1	0	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	a0012	2701	1	0	1	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	a0013	2701	1	1	0	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	a0014	2701	1	1	0	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	a0015	2701	1	0	0	0	0	1	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	a0016	2701	1	1	0	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	a0017	2701	1	0	0	0	1	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	a0018	2701	1	0	1	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	a0019	2701	1	0	0	1	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	a0020	2701	1	0	1	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	a0021	2701	1	0	0	1	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	a0022	2701	1	1	0	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPF_chr1_214598195_214669571	0/0	a0001	3114	81	7	16	42	4	12	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/1	a0002	3114	35	1	9	10	4	10	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0003	3114	27	0	5	17	0	5	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0004	3114	21	19	2	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0005	3114	15	1	4	9	0	1	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0006	3114	10	10	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571