JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CENPF_chr1_214598195_214669571	1/0	a0007	3114	9	6	0	1	0	1	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0008	3114	8	2	1	4	1	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0009	3114	5	5	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0010	3114	5	0	0	5	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0011	3114	4	4	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0012	3114	4	3	1	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0013	3114	4	3	1	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0014	3114	3	0	3	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0015	3114	3	3	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0016	3114	3	3	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0017	3114	3	3	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0018	3114	3	1	0	0	0	2	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0019	3114	2	2	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0020	3114	2	0	0	2	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0021	3114	2	0	1	0	1	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0022	3114	2	0	1	0	0	1	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0023	3114	2	0	0	0	0	2	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0024	3114	2	2	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0025	3114	2	2	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0026	3114	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0027	3114	1	0	0	0	0	1	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0028	3114	1	0	0	0	1	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0029	3114	1	0	1	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0030	3114	1	0	0	0	1	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0031	3114	1	0	0	1	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0032	3114	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0033	3114	1	0	0	1	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0034	3114	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0035	3114	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0036	3114	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0037	3114	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0038	3114	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0039	3114	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0040	3114	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0041	3114	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0042	3114	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0043	3114	1	0	0	0	0	1	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0044	3114	1	0	1	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0045	3114	1	0	1	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0046	3114	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0047	3114	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0048	3114	1	0	1	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0049	3114	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	a0050	3114	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPH_chr5_69184583_69215357	1/1	a0001	247	385	92	75	162	8	46	copy fasta	CENPH	chr5	69184583	69215357
CENPH_chr5_69184583_69215357	0/0	a0002	247	1	0	0	1	0	0	copy fasta	CENPH	chr5	69184583	69215357
CENPH_chr5_69184583_69215357	0/0	a0003	247	1	0	0	1	0	0	copy fasta	CENPH	chr5	69184583	69215357
CENPH_chr5_69184583_69215357	0/0	a0004	247	1	0	1	0	0	0	copy fasta	CENPH	chr5	69184583	69215357
CENPI_chrX_101093204_101171126	1/1	a0001	756	276	66	56	113	11	28	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	a0002	756	2	2	0	0	0	0	copy fasta	CENPI	chrX	101093204	101171126