JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CENPI_chrX_101093204_101171126	0/0	a0003	756	1	0	0	1	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	a0004	674	1	0	0	1	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	a0005	756	1	0	0	1	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	a0006	534	1	0	0	1	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPJ_chr13_24877279_24927861	1/1	a0001	1338	265	54	52	112	7	38	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	a0002	1338	78	10	11	50	4	3	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	a0003	1338	20	0	3	16	0	1	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	a0004	1338	17	3	8	0	4	2	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	a0005	1338	12	0	0	12	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	a0006	1338	11	9	2	0	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	a0007	1338	7	7	0	0	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	a0008	1338	6	5	1	0	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	a0009	1338	4	0	0	3	0	1	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	a0010	1338	3	0	0	3	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	a0011	1338	3	0	0	3	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	a0012	1338	3	3	0	0	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	a0013	1338	2	0	0	2	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	a0014	1338	1	0	0	1	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	a0015	1338	1	0	0	1	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	a0016	1338	1	0	0	1	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	a0017	1338	1	0	0	1	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	a0018	1338	1	0	0	0	0	1	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	a0019	1338	1	0	0	1	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	a0020	1338	1	0	0	0	1	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	a0021	1338	1	1	0	0	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	a0022	1338	1	0	1	0	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPK_chr5_65512766_65568168	1/1	a0001	269	372	92	76	143	18	41	copy fasta	CENPK	chr5	65512766	65568168
CENPK_chr5_65512766_65568168	0/0	a0002	269	1	0	0	1	0	0	copy fasta	CENPK	chr5	65512766	65568168
CENPK_chr5_65512766_65568168	0/0	a0003	269	1	0	0	0	0	1	copy fasta	CENPK	chr5	65512766	65568168
CENPL_chr1_173794550_173829883	1/1	a0001	344	351	89	50	159	10	41	copy fasta	CENPL	chr1	173794550	173829883
CENPL_chr1_173794550_173829883	0/0	a0002	344	4	0	0	4	0	0	copy fasta	CENPL	chr1	173794550	173829883
CENPL_chr1_173794550_173829883	0/0	a0003	344	1	0	0	0	0	1	copy fasta	CENPL	chr1	173794550	173829883
CENPL_chr1_173794550_173829883	0/0	a0004	344	1	0	0	1	0	0	copy fasta	CENPL	chr1	173794550	173829883
CENPL_chr1_173794550_173829883	0/0	a0005	344	1	1	0	0	0	0	copy fasta	CENPL	chr1	173794550	173829883
CENPM_chr22_41933737_41952152	1/1	a0001	180	255	72	54	85	10	32	copy fasta	CENPM	chr22	41933737	41952152
CENPM_chr22_41933737_41952152	0/0	a0002	180	1	0	0	0	0	1	copy fasta	CENPM	chr22	41933737	41952152
CENPM_chr22_41933737_41952152	0/0	a0003	150	1	0	0	1	0	0	copy fasta	CENPM	chr22	41933737	41952152
CENPM_chr22_41933737_41952152	0/0	a0004	180	1	0	0	0	0	1	copy fasta	CENPM	chr22	41933737	41952152
CENPN_chr16_81002214_81036485	0/1	a0001	339	190	33	43	82	7	24	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	a0002	339	188	48	20	110	2	8	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	a0003	339	5	0	2	0	1	2	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	1/0	a0004	339	5	3	1	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	a0005	339	4	0	0	4	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	a0006	339	2	0	2	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	a0007	339	1	1	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	a0008	339	1	0	0	1	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	a0009	339	1	0	0	1	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	a0010	339	1	1	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPO_chr2_24788425_24827376	1/1	a0001	300	306	64	67	124	17	32	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	a0002	300	69	9	9	45	0	6	copy fasta	CENPO	chr2	24788425	24827376