JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CENPO_chr2_24788425_24827376	0/0	a0003	300	1	1	0	0	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	a0004	300	1	0	0	0	1	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	a0005	300	1	0	1	0	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	a0006	300	1	0	1	0	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	a0007	300	1	1	0	0	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	a0008	300	1	1	0	0	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	a0009	300	1	0	0	1	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPP_chr9_92320953_92625529	0/0	a0001	288	251	59	46	98	16	32	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	a0002	288	5	4	1	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	a0003	288	3	3	0	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	a0004	288	1	0	1	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPQ_chr6_49458370_49498107	0/1	a0001	268	138	26	30	63	7	11	copy fasta	CENPQ	chr6	49458370	49498107
CENPQ_chr6_49458370_49498107	0/0	a0002	268	100	38	10	36	6	10	copy fasta	CENPQ	chr6	49458370	49498107
CENPQ_chr6_49458370_49498107	1/0	a0003	268	97	18	14	49	1	14	copy fasta	CENPQ	chr6	49458370	49498107
CENPQ_chr6_49458370_49498107	0/0	a0004	268	18	2	1	12	0	3	copy fasta	CENPQ	chr6	49458370	49498107
CENPQ_chr6_49458370_49498107	0/0	a0005	268	5	3	2	0	0	0	copy fasta	CENPQ	chr6	49458370	49498107
CENPQ_chr6_49458370_49498107	0/0	a0006	268	3	0	3	0	0	0	copy fasta	CENPQ	chr6	49458370	49498107
CENPQ_chr6_49458370_49498107	0/0	a0007	268	1	1	0	0	0	0	copy fasta	CENPQ	chr6	49458370	49498107
CENPS_chr1_10425433_10447808	1/1	a0001	138	409	98	77	174	14	44	copy fasta	CENPS	chr1	10425433	10447808
CENPS_chr1_10425433_10447808	0/0	a0002	138	1	0	1	0	0	0	copy fasta	CENPS	chr1	10425433	10447808
CENPT_chr16_67823157_67852693	1/1	a0001	561	224	79	50	62	3	28	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	a0002	561	19	0	1	18	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	a0003	561	9	9	0	0	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	a0004	561	5	0	4	0	1	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	a0005	561	3	0	0	3	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	a0006	561	1	0	0	1	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	a0007	561	1	0	0	1	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	a0008	561	1	0	1	0	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	a0009	561	1	1	0	0	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	a0010	561	1	0	0	1	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	a0011	561	1	1	0	0	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPU_chr4_184689085_184739096	1/1	a0001	418	158	46	23	64	8	15	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	a0002	418	126	5	22	88	3	8	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	a0003	418	22	15	5	0	0	2	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	a0004	418	18	16	2	0	0	0	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	a0005	418	18	5	8	0	0	5	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	a0006	418	10	2	6	0	1	1	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	a0007	418	2	0	0	0	0	2	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	a0008	389	2	2	0	0	0	0	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	a0009	418	1	0	0	0	0	1	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	a0010	418	1	1	0	0	0	0	copy fasta	CENPU	chr4	184689085	184739096
CENPVL1_chrX_51705512_51717131	0/0	a0000	0	2	0	0	2	0	0	copy fasta	CENPVL1	chrX	51705512	51717131
CENPVL1_chrX_51705512_51717131	0/0	a0001	272	204	53	37	86	6	22	copy fasta	CENPVL1	chrX	51705512	51717131
CENPVL1_chrX_51705512_51717131	0/0	a0002	272	27	6	8	8	2	3	copy fasta	CENPVL1	chrX	51705512	51717131
CENPVL1_chrX_51705512_51717131	0/0	a0003	272	2	1	1	0	0	0	copy fasta	CENPVL1	chrX	51705512	51717131
CENPVL1_chrX_51705512_51717131	0/0	a0004	272	2	2	0	0	0	0	copy fasta	CENPVL1	chrX	51705512	51717131
CENPVL1_chrX_51705512_51717131	0/0	a0005	272	1	0	0	0	0	1	copy fasta	CENPVL1	chrX	51705512	51717131
CENPVL2_chrX_51676212_51687831	0/0	a0000	0	1	0	0	1	0	0	copy fasta	CENPVL2	chrX	51676212	51687831
CENPVL2_chrX_51676212_51687831	0/0	a0001	272	202	48	36	94	6	18	copy fasta	CENPVL2	chrX	51676212	51687831
CENPVL2_chrX_51676212_51687831	0/0	a0002	272	30	7	10	8	2	3	copy fasta	CENPVL2	chrX	51676212	51687831