JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CENPVL2_chrX_51676212_51687831	0/0	a0003	272	3	2	1	0	0	0	copy fasta	CENPVL2	chrX	51676212	51687831
CENPVL2_chrX_51676212_51687831	0/0	a0004	214	1	0	0	0	0	1	copy fasta	CENPVL2	chrX	51676212	51687831
CENPVL3_chrX_51612020_51623912	0/0	a0000	0	2	0	0	2	0	0	copy fasta	CENPVL3	chrX	51612020	51623912
CENPVL3_chrX_51612020_51623912	0/0	a0001	272	194	48	20	94	6	26	copy fasta	CENPVL3	chrX	51612020	51623912
CENPVL3_chrX_51612020_51623912	1/1	a0002	272	98	21	32	37	2	4	copy fasta	CENPVL3	chrX	51612020	51623912
CENPVL3_chrX_51612020_51623912	0/0	a0003	272	3	0	0	3	0	0	copy fasta	CENPVL3	chrX	51612020	51623912
CENPVL3_chrX_51612020_51623912	0/0	a0004	272	1	0	0	0	1	0	copy fasta	CENPVL3	chrX	51612020	51623912
CENPV_chr17_16337537_16358469	0/1	a0001	275	210	40	31	108	5	25	copy fasta	CENPV	chr17	16337537	16358469
CENPV_chr17_16337537_16358469	1/0	a0002	272	132	33	45	31	7	15	copy fasta	CENPV	chr17	16337537	16358469
CENPV_chr17_16337537_16358469	0/0	a0003	140	6	2	0	4	0	0	copy fasta	CENPV	chr17	16337537	16358469
CENPV_chr17_16337537_16358469	0/0	a0004	278	2	0	0	2	0	0	copy fasta	CENPV	chr17	16337537	16358469
CENPV_chr17_16337537_16358469	0/0	a0005	290	2	0	0	2	0	0	copy fasta	CENPV	chr17	16337537	16358469
CENPV_chr17_16337537_16358469	0/0	a0006	266	1	1	0	0	0	0	copy fasta	CENPV	chr17	16337537	16358469
CENPV_chr17_16337537_16358469	0/0	a0007	137	1	1	0	0	0	0	copy fasta	CENPV	chr17	16337537	16358469
CENPV_chr17_16337537_16358469	0/0	a0008	275	1	0	0	1	0	0	copy fasta	CENPV	chr17	16337537	16358469
CENPV_chr17_16337537_16358469	0/0	a0009	278	1	1	0	0	0	0	copy fasta	CENPV	chr17	16337537	16358469
CENPW_chr6_126335115_126353875	1/1	a0001	88	283	92	49	100	8	32	copy fasta	CENPW	chr6	126335115	126353875
CENPW_chr6_126335115_126353875	0/0	a0002	88	9	2	3	0	2	2	copy fasta	CENPW	chr6	126335115	126353875
CENPX_chr17_82013703_82027878	1/1	a0001	81	399	94	76	172	16	39	copy fasta	CENPX	chr17	82013703	82027878
CENPX_chr17_82013703_82027878	0/0	a0002	81	2	0	1	0	0	1	copy fasta	CENPX	chr17	82013703	82027878
CENPX_chr17_82013703_82027878	0/0	a0003	81	1	0	1	0	0	0	copy fasta	CENPX	chr17	82013703	82027878
CEP104_chr1_3807086_3862211	1/1	a0001	925	137	67	26	20	8	14	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	a0002	925	130	6	37	66	4	17	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	a0003	925	96	6	14	61	1	14	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	a0004	925	3	3	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	a0005	925	2	2	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	a0006	925	2	0	0	2	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	a0007	925	1	0	0	0	1	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	a0008	925	1	0	0	0	0	1	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	a0009	925	1	0	0	0	0	1	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	a0010	925	1	0	1	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	a0011	925	1	0	0	0	0	1	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	a0012	925	1	1	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	a0013	925	1	0	0	1	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	a0014	925	1	0	0	1	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	a0015	925	1	0	0	1	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	a0016	925	1	1	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	a0017	925	1	1	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	a0018	925	1	1	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP112_chr17_65630537_66197133	1/1	a0001	955	56	19	12	8	3	12	copy fasta	CEP112	chr17	65630537	66197133
CEP112_chr17_65630537_66197133	0/0	a0002	955	50	26	8	6	3	7	copy fasta	CEP112	chr17	65630537	66197133
CEP112_chr17_65630537_66197133	0/0	a0003	955	2	0	0	2	0	0	copy fasta	CEP112	chr17	65630537	66197133
CEP112_chr17_65630537_66197133	0/0	a0004	955	2	2	0	0	0	0	copy fasta	CEP112	chr17	65630537	66197133
CEP112_chr17_65630537_66197133	0/0	a0005	955	1	1	0	0	0	0	copy fasta	CEP112	chr17	65630537	66197133
CEP112_chr17_65630537_66197133	0/0	a0006	955	1	0	0	0	0	1	copy fasta	CEP112	chr17	65630537	66197133
CEP120_chr5_123339892_123428403	1/1	a0001	986	167	52	38	53	8	14	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	a0002	986	89	14	12	53	2	8	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	a0003	986	74	13	11	42	1	7	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	a0004	986	34	6	8	14	0	6	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	a0005	986	6	6	0	0	0	0	copy fasta	CEP120	chr5	123339892	123428403