JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CEP120_chr5_123339892_123428403	0/0	a0006	986	2	1	1	0	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	a0007	986	1	1	0	0	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	a0008	986	1	0	0	0	0	1	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	a0009	986	1	0	0	0	1	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	a0010	986	1	1	0	0	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP126_chr11_101910010_102006062	0/0	a0001	1117	260	57	52	112	12	27	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	a0002	1117	40	0	5	29	0	6	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	a0003	1117	10	6	1	0	0	3	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	a0004	1117	7	7	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	a0005	1117	7	6	1	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	a0006	1117	2	2	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	a0007	1117	2	0	0	1	0	1	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	a0008	1117	1	0	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	a0009	1117	1	1	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	a0010	1117	1	0	0	0	0	1	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	a0011	1117	1	0	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	a0012	1117	1	1	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	a0013	1117	1	0	1	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	a0014	1117	1	0	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	a0015	1117	1	0	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP128_chr14_80491479_80946738	1/0	a0001	1094	91	40	14	27	1	8	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/1	a0002	1094	39	7	9	9	1	12	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	a0003	1094	8	0	2	5	0	1	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	a0004	1094	8	6	1	0	0	1	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	a0005	1094	6	5	1	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	a0006	1094	3	2	1	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	a0007	1094	2	2	0	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	a0008	1094	2	0	0	2	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	a0009	1094	1	1	0	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	a0010	1094	1	1	0	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	a0011	1094	1	1	0	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	a0012	1094	1	1	0	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	a0013	1094	1	0	0	1	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP131_chr17_81184596_81227965	0/1	a0001	1080	197	27	44	83	13	29	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0002	1080	51	16	2	26	1	6	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0003	1080	18	18	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0004	1080	13	3	1	9	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0005	1080	10	0	0	10	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0006	1080	9	0	7	2	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0007	1080	9	2	0	6	0	1	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	1/0	a0008	1080	8	5	2	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0009	1080	5	0	2	0	2	1	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0010	1080	5	0	0	0	0	5	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0011	1080	4	2	2	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0012	1080	4	0	1	3	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0013	1080	4	0	0	4	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0014	1080	3	0	0	3	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0015	1080	3	3	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0016	1080	3	0	2	0	1	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0017	1080	3	3	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965