JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CEP131_chr17_81184596_81227965	0/0	a0018	1080	2	0	0	2	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0019	1080	2	0	1	0	0	1	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0020	1080	2	0	0	2	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0021	1080	2	2	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0022	1080	1	1	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0023	1080	1	1	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0024	1080	1	1	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0025	1080	1	0	1	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0026	1080	1	1	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0027	1080	1	1	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0028	1080	1	0	0	1	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0029	1080	1	1	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0030	1080	1	0	0	1	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0031	1080	1	1	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0032	1080	1	1	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0033	1080	1	0	0	0	0	1	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0034	1080	1	0	0	0	1	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0035	1080	1	0	1	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0036	1080	1	0	0	1	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0037	1080	1	1	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0038	1080	1	1	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0039	1080	1	0	0	1	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0040	1080	1	0	0	0	0	1	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0041	1080	1	1	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0042	1080	1	1	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0043	1080	1	0	0	0	0	1	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0044	1080	1	1	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0045	1080	1	1	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0046	1080	1	1	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0047	1080	1	1	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	a0048	1080	1	1	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP135_chr4_55943945_56038361	1/1	a0001	1140	274	59	55	119	12	27	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	a0002	1140	48	7	10	23	2	6	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	a0003	1140	5	0	2	0	2	1	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	a0004	1140	4	4	0	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	a0005	1140	4	4	0	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	a0006	1140	2	1	1	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	a0007	1140	2	0	2	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	a0008	1140	2	0	0	2	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	a0009	1140	1	1	0	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	a0010	1140	1	0	0	1	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	a0011	1140	1	1	0	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	a0012	1140	1	0	0	1	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	a0013	1140	1	1	0	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP152_chr15_48732938_48816069	1/1	a0001	1710	220	59	36	81	14	28	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0002	1710	44	0	5	32	0	7	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0003	1710	27	0	4	23	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0004	1710	16	1	1	14	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0005	1710	4	4	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0006	1710	3	3	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069