Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADAD2_chr16_84186157_84202166	0/0	a0015	468	1	0	0	1	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	a0016	583	1	0	0	1	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	a0017	583	1	0	0	1	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	a0018	583	1	1	0	0	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	a0019	583	1	0	1	0	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAL_chr15_43325672_43359569	1/1	a0001	355	379	77	64	180	14	42	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	a0002	355	4	4	0	0	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	a0003	355	2	2	0	0	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	a0004	355	1	1	0	0	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAM10_chr15_58583809_58754707	1/1	a0001	748	339	81	46	160	12	38	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	a0002	748	2	0	0	2	0	0	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	a0003	748	1	1	0	0	0	0	copy fasta	ADAM10	chr15	58583809	58754707
ADAM11_chr17_44753988_44786846	1/1	a0001	769	330	92	73	117	14	32	copy fasta	ADAM11	chr17	44753988	44786846
ADAM11_chr17_44753988_44786846	0/0	a0002	769	1	0	1	0	0	0	copy fasta	ADAM11	chr17	44753988	44786846
ADAM11_chr17_44753988_44786846	0/0	a0003	769	1	0	0	1	0	0	copy fasta	ADAM11	chr17	44753988	44786846
ADAM11_chr17_44753988_44786846	0/0	a0004	769	1	1	0	0	0	0	copy fasta	ADAM11	chr17	44753988	44786846
ADAM11_chr17_44753988_44786846	0/0	a0005	769	1	0	0	1	0	0	copy fasta	ADAM11	chr17	44753988	44786846
ADAM11_chr17_44753988_44786846	0/0	a0006	769	1	0	0	1	0	0	copy fasta	ADAM11	chr17	44753988	44786846
ADAM11_chr17_44753988_44786846	0/0	a0007	769	1	1	0	0	0	0	copy fasta	ADAM11	chr17	44753988	44786846
ADAM12_chr10_126007391_126393477	0/1	a0001	906	124	44	23	39	5	12	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	1/0	a0002	906	105	21	11	55	7	10	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	a0003	906	5	2	1	2	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	a0004	906	4	2	0	2	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	a0005	906	2	0	2	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	a0006	906	2	2	0	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	a0007	906	1	1	0	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	a0008	906	1	0	0	0	0	1	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	a0009	906	1	1	0	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	a0010	906	1	1	0	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	a0011	906	1	0	0	0	0	1	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	a0012	906	1	1	0	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	a0013	906	1	1	0	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	a0014	906	1	0	1	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	a0015	906	1	1	0	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	a0016	906	1	1	0	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM15_chr1_155046316_155067775	0/1	a0001	863	234	50	46	88	11	38	copy fasta	ADAM15	chr1	155046316	155067775
ADAM15_chr1_155046316_155067775	0/0	a0002	863	37	19	6	1	4	7	copy fasta	ADAM15	chr1	155046316	155067775
ADAM15_chr1_155046316_155067775	1/0	a0003	863	26	14	8	1	0	2	copy fasta	ADAM15	chr1	155046316	155067775
ADAM15_chr1_155046316_155067775	0/0	a0004	863	11	11	0	0	0	0	copy fasta	ADAM15	chr1	155046316	155067775
ADAM15_chr1_155046316_155067775	0/0	a0005	863	9	0	3	6	0	0	copy fasta	ADAM15	chr1	155046316	155067775
ADAM15_chr1_155046316_155067775	0/0	a0006	863	2	0	0	2	0	0	copy fasta	ADAM15	chr1	155046316	155067775
ADAM15_chr1_155046316_155067775	0/0	a0007	863	1	0	0	0	1	0	copy fasta	ADAM15	chr1	155046316	155067775
ADAM15_chr1_155046316_155067775	0/0	a0008	863	1	0	1	0	0	0	copy fasta	ADAM15	chr1	155046316	155067775
ADAM15_chr1_155046316_155067775	0/0	a0009	863	1	0	0	0	0	1	copy fasta	ADAM15	chr1	155046316	155067775
ADAM15_chr1_155046316_155067775	0/0	a0010	863	1	1	0	0	0	0	copy fasta	ADAM15	chr1	155046316	155067775
ADAM15_chr1_155046316_155067775	0/0	a0011	863	1	1	0	0	0	0	copy fasta	ADAM15	chr1	155046316	155067775
ADAM17_chr2_9483486_9560830	1/1	a0001	824	215	78	52	35	14	34	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	a0002	824	13	10	3	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	a0003	824	2	2	0	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	a0004	824	1	1	0	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830