JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CEP152_chr15_48732938_48816069	0/0	a0007	1710	3	3	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0008	1710	2	0	0	0	0	2	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0009	1710	2	0	0	2	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0010	1710	2	2	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0011	1710	1	0	0	1	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0012	1710	1	0	1	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0013	1710	1	0	0	1	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0014	1710	1	0	0	0	0	1	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0015	1710	1	0	0	1	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0016	1710	1	0	0	1	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0017	1710	1	0	0	1	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0018	1362	1	1	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0019	1710	1	0	0	1	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0020	1710	1	1	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0021	1710	1	1	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0022	1710	1	0	0	1	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0023	1710	1	1	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0024	1710	1	1	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0025	1710	1	0	0	1	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0026	1710	1	0	0	1	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0027	1710	1	1	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0028	1710	1	0	1	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	a0029	1710	1	0	0	1	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP162_chr6_84119250_84232643	1/1	a0001	1403	172	60	40	41	5	24	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	a0002	1403	17	12	3	0	1	1	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	a0003	1417	13	1	8	0	0	4	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	a0004	1403	3	2	1	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	a0005	1403	2	2	0	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	a0006	1403	1	1	0	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	a0007	1403	1	1	0	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	a0008	1403	1	1	0	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	a0009	1403	1	1	0	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	a0010	1403	1	1	0	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	a0011	1417	1	0	0	0	0	1	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	a0012	1403	1	0	0	1	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP164_chr11_117322854_117418266	1/1	a0001	1460	133	15	27	66	5	18	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	a0002	1460	102	21	11	60	4	6	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	a0003	1460	62	19	14	18	3	8	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	a0004	1460	53	15	10	17	3	8	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	a0005	1460	6	6	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	a0006	1460	6	0	0	5	0	1	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	a0007	1460	4	0	3	0	1	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	a0008	1460	3	3	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	a0009	1460	2	2	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	a0010	1460	2	0	0	0	0	2	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	a0011	1460	2	2	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	a0012	1460	1	0	0	0	0	1	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	a0013	1460	1	1	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	a0014	1460	1	1	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	a0015	1460	1	1	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266