JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CEP170_chr1_243119428_243260281	0/0	a0008	1584	1	1	0	0	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	a0009	1584	1	0	0	1	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	a0010	1584	1	0	1	0	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	a0011	1584	1	0	0	1	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	a0012	1584	1	0	0	1	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP192_chr18_12986362_13130036	0/0	a0000	0	1	0	0	0	0	1	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0001	2537	73	6	6	50	1	10	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0002	2537	71	10	17	32	5	7	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	1/1	a0003	2537	63	3	17	23	4	14	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0004	2537	50	0	2	44	0	4	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0005	2537	47	21	4	15	2	5	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0006	2537	12	10	0	0	1	1	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0007	2536	10	9	1	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0008	2537	8	8	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0009	2537	7	1	0	6	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0010	2537	7	0	7	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0011	2537	5	3	2	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0012	2537	4	4	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0013	2537	3	3	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0014	2537	3	0	0	3	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0015	2537	3	3	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0016	2537	2	2	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0017	2537	2	0	0	0	2	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0018	2537	2	1	0	1	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0019	2537	2	2	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0020	2537	1	1	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0021	2537	1	0	0	1	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0022	2537	1	1	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0023	2537	1	0	1	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0024	2537	1	0	1	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0025	2537	1	0	1	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0026	2537	1	0	1	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0027	2537	1	1	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0028	2537	1	0	0	1	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0029	2537	1	1	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0030	2537	1	1	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0031	2537	1	0	0	1	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0032	2537	1	0	0	0	1	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0033	2537	1	0	0	1	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0034	2537	1	1	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0035	2537	1	1	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	a0036	2537	1	1	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP19_chr3_196701277_196717250	1/1	a0001	163	430	98	82	184	18	46	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	a0002	163	2	0	0	2	0	0	copy fasta	CEP19	chr3	196701277	196717250
CEP20_chr16_15860719_15893603	0/1	a0001	174	363	83	71	154	13	41	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	a0002	175	67	5	9	49	3	1	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	a0003	174	2	0	0	0	0	2	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	a0004	174	1	0	0	1	0	0	copy fasta	CEP20	chr16	15860719	15893603
CEP250_chr20_35450598_35524280	1/1	a0001	2442	178	46	36	53	9	32	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	a0002	2442	44	14	7	19	1	3	copy fasta	CEP250	chr20	35450598	35524280