JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CEP250_chr20_35450598_35524280	0/0	a0003	2442	8	8	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	a0004	2442	6	6	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	a0005	2442	5	5	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	a0006	2442	3	0	0	3	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	a0007	2442	3	3	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	a0008	2442	1	1	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	a0009	2442	1	1	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	a0010	2442	1	0	0	1	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	a0011	2442	1	0	0	1	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	a0012	2442	1	0	0	1	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	a0013	2442	1	0	0	1	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	a0014	2442	1	0	1	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	a0015	2442	1	0	0	1	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	a0016	2442	1	0	0	0	0	1	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	a0017	2442	1	1	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	a0018	2442	1	1	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	a0019	2442	1	1	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	a0020	2442	1	1	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP290_chr12_88044016_88147088	1/1	a0001	2479	134	48	26	34	4	20	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	a0002	2479	31	0	6	24	0	1	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	a0003	2479	16	16	0	0	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	a0004	2479	13	10	3	0	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	a0005	2479	12	2	2	8	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	a0006	2479	10	1	2	2	0	5	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	a0007	2479	3	0	0	1	0	2	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	a0008	2479	3	3	0	0	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	a0009	2479	3	3	0	0	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	a0010	2479	2	0	0	2	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	a0011	1925	1	0	0	1	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	a0012	2479	1	1	0	0	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	a0013	2479	1	0	1	0	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	a0014	2479	1	1	0	0	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	a0015	2479	1	1	0	0	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	a0016	2479	1	0	0	1	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	a0017	2479	1	0	0	1	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP295NL_chr17_78885579_78908201	1/1	a0001	621	338	43	68	176	14	35	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	a0002	621	20	18	2	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	a0003	621	13	1	5	0	2	5	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	a0004	621	9	0	0	8	0	1	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	a0005	621	8	8	0	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	a0006	621	8	8	0	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	a0007	309	7	0	0	7	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	a0008	621	4	4	0	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	a0009	621	3	3	0	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	a0010	621	3	3	0	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	a0011	621	3	3	0	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	a0012	621	3	2	1	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	a0013	621	2	0	0	0	0	2	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	a0014	621	1	0	0	0	0	1	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	a0015	621	1	0	0	0	0	1	copy fasta	CEP295NL	chr17	78885579	78908201