JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CEP295NL_chr17_78885579_78908201	0/0	a0016	621	1	0	0	1	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	a0017	621	1	0	0	0	0	1	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	a0018	621	1	1	0	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	a0019	621	1	1	0	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	a0020	621	1	1	0	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	a0021	621	1	1	0	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	a0022	621	1	1	0	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295_chr11_93656682_93735358	0/1	a0001	2601	194	23	33	100	11	26	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0002	2601	39	0	2	36	0	1	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	1/0	a0003	2601	39	27	6	4	0	1	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0004	2601	17	7	6	0	3	1	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0005	2601	15	12	2	0	0	1	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0006	2601	13	0	0	13	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0007	2601	4	4	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0008	2601	4	4	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0009	2601	2	1	1	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0010	2601	2	2	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0011	2601	2	0	0	1	0	1	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0012	2601	2	0	0	2	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0013	2601	1	1	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0014	192	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0015	2601	1	1	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0016	2601	1	0	1	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0017	2601	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0018	2601	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0019	2601	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0020	2601	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0021	2601	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0022	2601	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0023	2601	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0024	2601	1	1	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0025	2601	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0026	2601	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0027	2601	1	0	1	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0028	2601	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0029	2409	1	0	0	1	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0030	2601	1	1	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0031	2601	1	1	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0032	2601	1	1	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	a0033	2601	1	0	0	0	0	1	copy fasta	CEP295	chr11	93656682	93735358
CEP350_chr1_179949810_180119875	0/1	a0001	3117	88	14	19	42	4	8	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	1/0	a0002	3117	54	36	12	4	0	1	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	a0003	3117	43	2	1	34	1	5	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	a0004	3117	16	10	1	0	2	3	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	a0005	3117	10	3	1	3	0	3	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	a0006	3117	6	5	1	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	a0007	3117	6	0	4	0	1	1	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	a0008	3117	3	3	0	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	a0009	3117	3	3	0	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	a0010	3117	3	3	0	0	0	0	copy fasta	CEP350	chr1	179949810	180119875