JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CEP350_chr1_179949810_180119875	0/0	a0011	3117	2	0	0	2	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	a0012	3117	2	2	0	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	a0013	3117	1	0	0	1	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	a0014	3117	1	0	0	1	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	a0015	3117	1	0	0	1	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	a0016	3117	1	1	0	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	a0017	3117	1	0	0	1	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	a0018	3117	1	0	1	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	a0019	3117	1	0	1	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	a0020	3117	1	0	1	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	a0021	3117	1	0	0	0	0	1	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	a0022	3117	1	1	0	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	a0023	3117	1	0	0	1	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	a0024	3117	1	1	0	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP41_chr7_130388771_130446016	1/1	a0001	373	343	82	69	138	14	38	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	a0002	373	1	0	1	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	a0003	373	1	1	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	a0004	373	1	1	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP43_chr6_166994397_167057718	1/1	a0001	399	335	63	59	162	16	33	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	a0002	399	21	2	1	15	0	3	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	a0003	399	8	7	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	a0004	399	6	5	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	a0005	399	5	5	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	a0006	399	1	0	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP44_chr4_174278911_174325328	1/1	a0001	390	255	42	45	142	5	19	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	a0002	390	125	40	30	27	9	19	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	a0003	390	4	3	1	0	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	a0004	390	1	1	0	0	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	a0005	390	1	1	0	0	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	a0006	390	1	0	0	1	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	a0007	390	1	1	0	0	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP55_chr10_93491612_93534092	0/1	a0001	464	144	19	34	61	6	23	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	a0002	464	72	12	3	50	2	5	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	a0003	464	49	11	12	24	1	1	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	a0004	464	24	3	0	18	0	3	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	a0005	464	17	0	8	8	0	1	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	a0006	464	17	3	6	3	1	4	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	a0007	464	13	12	1	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	a0008	464	12	12	0	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	a0009	464	8	0	3	0	2	3	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	1/0	a0010	464	7	5	1	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	a0011	464	6	6	0	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	a0012	464	4	4	0	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	a0013	464	3	2	1	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	a0014	464	2	2	0	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	a0015	464	2	2	0	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	a0016	464	2	0	2	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	a0017	464	1	1	0	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	a0018	464	1	0	0	1	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	a0019	464	1	0	0	1	0	0	copy fasta	CEP55	chr10	93491612	93534092