JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CEP89_chr19_32870925_32976958	0/0	a0004	783	22	3	2	9	1	7	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	a0005	783	12	12	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	a0006	783	4	4	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	a0007	783	3	3	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	a0008	783	1	1	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	a0009	783	1	0	0	1	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	a0010	230	1	0	0	1	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/1	a0011	783	1	0	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	a0012	783	1	0	0	1	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	a0013	783	1	0	1	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	a0014	783	1	0	0	0	0	1	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	a0015	783	1	1	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP95_chr17_64501977_64542946	1/1	a0001	821	238	81	44	73	7	31	copy fasta	CEP95	chr17	64501977	64542946
CEP95_chr17_64501977_64542946	0/0	a0002	821	2	2	0	0	0	0	copy fasta	CEP95	chr17	64501977	64542946
CEP95_chr17_64501977_64542946	0/0	a0003	821	1	1	0	0	0	0	copy fasta	CEP95	chr17	64501977	64542946
CEP95_chr17_64501977_64542946	0/0	a0004	821	1	1	0	0	0	0	copy fasta	CEP95	chr17	64501977	64542946
CEP95_chr17_64501977_64542946	0/0	a0005	821	1	1	0	0	0	0	copy fasta	CEP95	chr17	64501977	64542946
CEP95_chr17_64501977_64542946	0/0	a0006	821	1	0	0	0	1	0	copy fasta	CEP95	chr17	64501977	64542946
CEP95_chr17_64501977_64542946	0/0	a0007	821	1	0	0	0	0	1	copy fasta	CEP95	chr17	64501977	64542946
CEP95_chr17_64501977_64542946	0/0	a0008	821	1	0	0	0	0	1	copy fasta	CEP95	chr17	64501977	64542946
CEP95_chr17_64501977_64542946	0/0	a0009	821	1	0	0	1	0	0	copy fasta	CEP95	chr17	64501977	64542946
CEP95_chr17_64501977_64542946	0/0	a0010	821	1	0	0	0	0	1	copy fasta	CEP95	chr17	64501977	64542946
CEP97_chr3_101719614_101775562	1/1	a0001	865	336	84	57	151	11	31	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	a0002	865	3	2	1	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	a0003	865	2	0	0	2	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	a0004	865	2	0	0	2	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	a0005	865	1	0	0	0	1	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	a0006	865	1	0	0	0	0	1	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	a0007	607	1	0	0	1	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	a0008	865	1	0	0	1	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	a0009	865	1	1	0	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	a0010	865	1	0	0	1	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	a0011	865	1	0	1	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	a0012	865	1	0	1	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	a0013	865	1	1	0	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEPT1_chr1_111135223_111190104	1/1	a0001	416	409	94	71	182	12	48	copy fasta	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	a0002	416	1	0	1	0	0	0	copy fasta	CEPT1	chr1	111135223	111190104
CER1_chr9_14714724_14727733	1/0	a0001	267	314	18	59	191	10	35	copy fasta	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	a0002	267	106	61	19	17	5	4	copy fasta	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/1	a0003	267	30	10	10	2	1	6	copy fasta	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	a0004	267	7	7	0	0	0	0	copy fasta	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	a0005	267	1	0	0	1	0	0	copy fasta	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	a0006	231	1	0	0	1	0	0	copy fasta	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	a0007	267	1	0	0	0	0	1	copy fasta	CER1	chr9	14714724	14727733
CERCAM_chr9_128415857_128442347	1/1	a0001	595	364	64	72	171	14	41	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	a0002	595	23	23	0	0	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	a0003	595	3	3	0	0	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	a0004	595	2	0	0	0	0	2	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	a0005	595	2	2	0	0	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	a0006	595	1	0	0	0	0	1	copy fasta	CERCAM	chr9	128415857	128442347