JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CERCAM_chr9_128415857_128442347	0/0	a0007	595	1	0	0	1	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	a0008	595	1	0	0	1	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	a0009	595	1	1	0	0	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	a0010	595	1	1	0	0	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	a0011	595	1	0	0	1	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERKL_chr2_181531672_181662105	1/1	a0001	532	213	54	36	86	10	25	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	a0002	532	73	7	16	46	2	2	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	a0003	532	2	2	0	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	a0004	532	2	2	0	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	a0005	532	2	2	0	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	a0006	532	1	1	0	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	a0007	532	1	0	1	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	a0008	487	1	0	1	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	a0009	532	1	1	0	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	a0010	532	1	1	0	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	a0011	532	1	0	0	0	0	1	copy fasta	CERKL	chr2	181531672	181662105
CERK_chr22_46679410_46743252	1/1	a0001	537	311	75	66	116	15	37	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	a0002	537	8	1	4	0	1	2	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	a0003	537	6	6	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	a0004	537	3	0	1	0	0	2	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	a0005	537	2	0	0	2	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	a0006	537	2	1	1	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	a0007	537	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	a0008	537	1	0	0	0	0	1	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	a0009	537	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	a0010	537	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	a0011	537	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	a0012	537	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	a0013	537	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	a0014	537	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERS1_chr19_18863545_18901158	1/1	a0001	350	378	93	60	165	14	44	copy fasta	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	a0002	350	1	0	0	1	0	0	copy fasta	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	a0003	350	1	1	0	0	0	0	copy fasta	CERS1	chr19	18863545	18901158
CERS2_chr1_150960186_150979835	1/1	a0001	380	362	92	67	158	14	29	copy fasta	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	a0002	380	20	0	7	6	2	5	copy fasta	CERS2	chr1	150960186	150979835
CERS3_chr15_100395395_100533950	0/1	a0001	383	304	57	55	150	7	34	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	a0002	383	44	28	8	1	2	5	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	a0003	383	6	0	2	3	0	1	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	a0004	383	3	0	2	0	1	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	a0005	383	2	2	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	a0006	383	1	0	1	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	1/0	a0007	383	1	0	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	a0008	383	1	1	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS4_chr19_8204370_8267421	0/0	a0001	394	274	42	60	125	14	33	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	a0002	394	56	24	3	26	0	3	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	1/1	a0003	394	54	21	4	18	2	7	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	a0004	394	26	6	8	7	0	5	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	a0005	394	2	2	0	0	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	a0006	394	2	2	0	0	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	a0007	394	1	0	0	1	0	0	copy fasta	CERS4	chr19	8204370	8267421