Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADAM17_chr2_9483486_9560830	0/0	a0005	824	1	1	0	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	a0006	824	1	0	0	1	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	a0007	824	1	0	1	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM18_chr8_39579568_39735065	0/1	a0001	739	303	57	71	130	8	36	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	a0002	739	12	10	1	1	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	a0003	739	10	9	0	0	0	1	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	a0004	739	7	7	0	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	a0005	739	3	3	0	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	a0006	739	3	3	0	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	a0007	739	2	0	0	2	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	a0008	739	1	1	0	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	a0009	739	1	0	1	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	a0010	739	1	1	0	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	a0011	739	1	0	1	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	a0012	739	1	0	0	1	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	a0013	739	1	1	0	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	a0014	739	1	0	0	0	0	1	copy fasta	ADAM18	chr8	39579568	39735065
ADAM19_chr5_157472304_157580775	1/1	a0001	918	133	8	31	77	2	13	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	a0002	918	103	33	23	24	6	17	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	a0003	918	17	5	6	1	3	2	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	a0004	918	14	11	3	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	a0005	918	9	9	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	a0006	918	6	6	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	a0007	918	5	2	1	0	2	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	a0008	918	4	4	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	a0009	918	4	4	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	a0010	918	3	1	2	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	a0011	918	2	2	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	a0012	918	2	1	1	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	a0013	918	2	2	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	a0014	918	2	0	2	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	a0015	918	1	1	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	a0016	918	1	0	0	0	1	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	a0017	918	1	1	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	a0018	918	1	0	1	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM20_chr14_70517358_70540004	1/1	a0001	726	380	77	69	182	12	38	copy fasta	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	a0002	726	8	8	0	0	0	0	copy fasta	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	a0003	726	6	0	0	6	0	0	copy fasta	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	a0004	726	3	0	3	0	0	0	copy fasta	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	a0005	726	1	1	0	0	0	0	copy fasta	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	a0006	697	1	0	0	1	0	0	copy fasta	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	a0007	726	1	0	0	1	0	0	copy fasta	ADAM20	chr14	70517358	70540004
ADAM21_chr14_70447174_70464905	0/1	a0001	722	223	25	47	106	13	31	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	a0002	722	111	21	14	67	1	8	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	a0003	722	39	10	5	20	1	3	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	a0004	722	11	6	3	0	1	1	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	1/0	a0005	722	10	9	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	a0006	722	7	7	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	a0007	722	6	0	0	6	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	a0008	722	4	0	0	4	0	0	copy fasta	ADAM21	chr14	70447174	70464905