JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CERS4_chr19_8204370_8267421	0/0	a0008	394	1	1	0	0	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	a0009	394	1	0	1	0	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	a0010	394	1	0	0	1	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS5_chr12_50124289_50172369	0/1	a0001	392	259	85	39	100	6	28	copy fasta	CERS5	chr12	50124289	50172369
CERS5_chr12_50124289_50172369	1/0	a0002	392	61	5	15	20	8	12	copy fasta	CERS5	chr12	50124289	50172369
CERS6_chr2_168451272_168780134	1/1	a0001	384	173	87	18	52	2	12	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	a0002	384	1	0	1	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	a0003	384	1	0	1	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	a0004	384	1	1	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERT1_chr5_75372775_75516629	1/1	a0001	624	334	89	54	147	8	34	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	a0002	624	1	0	0	1	0	0	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	a0003	624	1	1	0	0	0	0	copy fasta	CERT1	chr5	75372775	75516629
CES1_chr16_55797851_55838096	1/0	a0001	568	59	8	11	26	3	10	copy fasta	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	a0002	568	15	1	1	10	0	3	copy fasta	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	a0003	568	5	0	0	5	0	0	copy fasta	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	a0004	568	3	2	0	0	1	0	copy fasta	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	a0005	568	2	2	0	0	0	0	copy fasta	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	a0006	568	1	0	0	1	0	0	copy fasta	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	a0007	568	1	0	0	0	0	1	copy fasta	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	a0008	568	1	1	0	0	0	0	copy fasta	CES1	chr16	55797851	55838096
CES2_chr16_66930516_66950096	1/1	a0001	559	368	95	52	170	10	39	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	a0002	559	2	2	0	0	0	0	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	a0003	559	1	0	1	0	0	0	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	a0004	559	1	1	0	0	0	0	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	a0005	559	1	0	0	0	0	1	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	a0006	559	1	0	1	0	0	0	copy fasta	CES2	chr16	66930516	66950096
CES3_chr16_66956266_66980149	1/1	a0001	571	297	79	51	124	14	27	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	a0002	571	13	6	1	0	0	6	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	a0003	571	6	5	1	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	a0004	571	2	0	0	2	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	a0005	571	2	0	2	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	a0006	429	2	2	0	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	a0007	571	1	1	0	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	a0008	571	1	0	0	0	0	1	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	a0009	571	1	0	0	1	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	a0010	571	1	1	0	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	a0011	571	1	0	1	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	a0012	571	1	0	0	1	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	a0013	571	1	0	0	1	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	a0014	571	1	0	0	1	0	0	copy fasta	CES3	chr16	66956266	66980149
CES4A_chr16_66983589_67015417	1/1	a0001	561	175	16	42	80	9	26	copy fasta	CES4A	chr16	66983589	67015417
CES4A_chr16_66983589_67015417	0/0	a0002	561	90	40	9	30	1	10	copy fasta	CES4A	chr16	66983589	67015417
CES4A_chr16_66983589_67015417	0/0	a0003	561	37	36	1	0	0	0	copy fasta	CES4A	chr16	66983589	67015417
CES4A_chr16_66983589_67015417	0/0	a0004	561	1	1	0	0	0	0	copy fasta	CES4A	chr16	66983589	67015417
CES4A_chr16_66983589_67015417	0/0	a0005	561	1	0	1	0	0	0	copy fasta	CES4A	chr16	66983589	67015417
CES4A_chr16_66983589_67015417	0/0	a0006	561	1	0	1	0	0	0	copy fasta	CES4A	chr16	66983589	67015417
CES4A_chr16_66983589_67015417	0/0	a0007	561	1	1	0	0	0	0	copy fasta	CES4A	chr16	66983589	67015417
CES5A_chr16_55841154_55880373	0/0	a0001	575	165	16	44	72	13	20	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0002	575	67	14	7	34	2	10	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0003	575	58	13	11	25	3	6	copy fasta	CES5A	chr16	55841154	55880373