JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CES5A_chr16_55841154_55880373	0/0	a0004	575	30	2	6	21	0	1	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/1	a0005	575	22	8	0	10	0	3	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0006	575	18	1	5	11	0	1	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0007	173	10	9	1	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0008	575	9	5	0	4	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0009	575	7	0	0	7	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0010	575	6	1	1	1	0	3	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0011	173	4	4	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0012	575	4	3	0	1	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0013	575	3	3	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0014	575	3	0	0	3	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0015	575	3	0	0	3	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0016	575	3	2	1	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0017	575	3	0	0	3	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0018	575	2	0	0	2	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0019	575	2	2	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0020	575	2	0	0	2	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0021	575	2	2	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0022	575	2	2	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0023	575	1	0	0	1	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0024	575	1	0	0	1	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0025	70	1	0	0	1	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0026	575	1	0	1	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0027	575	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0028	575	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0029	575	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0030	575	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0031	575	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0032	575	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0033	575	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0034	575	1	0	0	1	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0035	575	1	0	0	1	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0036	575	1	0	0	0	0	1	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0037	575	1	0	0	0	0	1	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0038	575	1	0	0	1	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0039	575	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0040	527	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0041	575	1	0	0	1	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0042	575	1	0	0	0	0	1	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0043	575	1	0	0	0	0	1	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0044	575	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0045	575	1	0	1	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	a0046	575	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CETN1_chr18_575380_587114	1/1	a0001	172	339	81	62	140	13	41	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	a0002	172	81	16	12	47	3	3	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	a0003	172	1	1	0	0	0	0	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	a0004	172	1	0	0	1	0	0	copy fasta	CETN1	chr18	575380	587114
CETN2_chrX_152821994_152835757	1/1	a0001	172	320	76	52	149	9	32	copy fasta	CETN2	chrX	152821994	152835757
CETN2_chrX_152821994_152835757	0/0	a0002	56	1	0	0	1	0	0	copy fasta	CETN2	chrX	152821994	152835757
CETN3_chr5_90387257_90414756	1/0	a0001	167	285	88	58	100	11	27	copy fasta	CETN3	chr5	90387257	90414756