JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CFAP126_chr1_161359733_161372876	0/0	a0003	177	1	0	0	0	1	0	copy fasta	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	a0004	177	1	0	0	0	1	0	copy fasta	CFAP126	chr1	161359733	161372876
CFAP141_chr1_154194085_154211333	1/0	a0001	101	370	96	70	150	14	39	copy fasta	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/1	a0002	40	1	0	0	0	0	0	copy fasta	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/0	a0003	101	1	0	0	0	0	1	copy fasta	CFAP141	chr1	154194085	154211333
CFAP144_chr1_43142904_43161396	1/1	a0001	134	395	97	82	150	16	48	copy fasta	CFAP144	chr1	43142904	43161396
CFAP144_chr1_43142904_43161396	0/0	a0002	134	1	1	0	0	0	0	copy fasta	CFAP144	chr1	43142904	43161396
CFAP157_chr9_127701988_127721002	1/0	a0001	520	162	38	27	74	7	15	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/1	a0002	520	156	36	41	42	6	30	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	a0003	520	12	0	0	12	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	a0004	520	8	8	0	0	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	a0005	496	6	1	4	0	0	1	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	a0006	520	4	3	1	0	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	a0007	439	2	2	0	0	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	a0008	520	1	0	0	1	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	a0009	520	1	0	0	0	1	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	a0010	520	1	0	0	1	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	a0011	520	1	0	1	0	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP161_chr15_81129270_81154179	1/1	a0001	301	410	100	72	183	8	45	copy fasta	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	a0002	301	36	0	5	30	0	1	copy fasta	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	a0003	301	1	0	0	1	0	0	copy fasta	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	a0004	301	1	0	1	0	0	0	copy fasta	CFAP161	chr15	81129270	81154179
CFAP206_chr6_87402972_87469465	1/0	a0001	622	317	70	65	136	16	29	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/1	a0002	622	35	7	7	17	1	2	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	a0003	622	5	3	2	0	0	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	a0004	622	4	0	1	0	0	3	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	a0005	622	4	0	0	4	0	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	a0006	622	2	2	0	0	0	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	a0007	622	2	2	0	0	0	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	a0008	622	2	0	1	0	1	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	a0009	622	1	1	0	0	0	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	a0010	622	1	1	0	0	0	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	a0011	622	1	0	0	1	0	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	a0012	622	1	0	0	1	0	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	a0013	622	1	0	0	1	0	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP20DC_chr3_58737008_59055025	1/1	a0001	814	176	46	37	73	8	10	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	a0002	814	11	11	0	0	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	a0003	814	7	6	1	0	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	a0004	814	3	3	0	0	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	a0005	814	1	1	0	0	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	a0006	814	1	1	0	0	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	a0007	814	1	0	0	1	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	a0008	814	1	0	0	1	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	a0009	814	1	0	0	1	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	a0010	814	1	1	0	0	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	a0011	814	1	1	0	0	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20_chr16_58108592_58134381	1/1	a0001	193	400	88	70	184	12	44	copy fasta	CFAP20	chr16	58108592	58134381
CFAP210_chr2_169640425_169699405	1/1	a0001	552	311	63	49	154	11	32	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	a0002	552	27	0	0	23	1	3	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	a0003	552	18	6	3	4	1	4	copy fasta	CFAP210	chr2	169640425	169699405