JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CFAP298_chr21_32594354_32617377	0/0	a0004	290	1	0	0	1	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	a0005	290	1	0	1	0	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	a0006	290	1	0	0	1	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP299_chr4_80330730_80968750	0/0	a0001	233	69	28	9	29	0	3	copy fasta	CFAP299	chr4	80330730	80968750
CFAP299_chr4_80330730_80968750	0/0	a0002	233	26	17	3	5	0	1	copy fasta	CFAP299	chr4	80330730	80968750
CFAP299_chr4_80330730_80968750	0/0	a0003	233	1	1	0	0	0	0	copy fasta	CFAP299	chr4	80330730	80968750
CFAP300_chr11_102042437_102089554	1/1	a0001	267	345	77	72	152	6	36	copy fasta	CFAP300	chr11	102042437	102089554
CFAP300_chr11_102042437_102089554	0/0	a0002	267	1	1	0	0	0	0	copy fasta	CFAP300	chr11	102042437	102089554
CFAP36_chr2_55514718_55550079	0/0	a0001	342	253	58	51	102	14	28	copy fasta	CFAP36	chr2	55514718	55550079
CFAP36_chr2_55514718_55550079	1/0	a0002	342	94	2	7	75	0	9	copy fasta	CFAP36	chr2	55514718	55550079
CFAP36_chr2_55514718_55550079	0/1	a0003	342	47	30	6	7	0	3	copy fasta	CFAP36	chr2	55514718	55550079
CFAP36_chr2_55514718_55550079	0/0	a0004	342	4	4	0	0	0	0	copy fasta	CFAP36	chr2	55514718	55550079
CFAP36_chr2_55514718_55550079	0/0	a0005	342	1	0	0	0	0	1	copy fasta	CFAP36	chr2	55514718	55550079
CFAP36_chr2_55514718_55550079	0/0	a0006	342	1	0	0	0	0	1	copy fasta	CFAP36	chr2	55514718	55550079
CFAP410_chr21_44323944_44344390	0/0	a0000	0	1	1	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	1/1	a0001	256	369	81	65	171	13	37	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	a0002	256	22	0	1	15	0	6	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	a0003	256	22	2	11	3	0	6	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	a0004	256	10	7	3	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	a0005	256	6	6	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	a0006	256	3	0	0	3	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	a0007	256	1	0	0	0	1	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	a0008	256	1	1	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	a0009	256	1	0	0	0	0	1	copy fasta	CFAP410	chr21	44323944	44344390
CFAP418_chr8_95239913_95274201	1/1	a0001	207	380	86	62	173	14	43	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	a0002	207	7	4	2	1	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	a0003	207	1	0	0	0	0	1	copy fasta	CFAP418	chr8	95239913	95274201
CFAP43_chr10_104124888_104237364	1/0	a0001	1665	245	70	47	102	7	18	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/1	a0002	1665	34	4	3	22	0	4	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	a0003	1665	9	0	0	9	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	a0004	1665	5	0	0	5	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	a0005	1665	2	1	0	0	1	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	a0006	1665	1	1	0	0	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	a0007	1665	1	1	0	0	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	a0008	1665	1	1	0	0	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	a0009	1665	1	0	0	1	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	a0010	1665	1	0	0	1	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	a0011	1665	1	1	0	0	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	a0012	1665	1	0	0	1	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	a0013	1665	1	0	1	0	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	a0014	1665	1	0	0	1	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	a0015	1665	1	1	0	0	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	a0016	1665	1	0	1	0	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP44_chr3_113281930_113446493	0/0	a0001	1854	120	36	23	40	8	13	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0002	1854	70	1	18	44	1	6	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0003	1854	46	11	9	18	4	4	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0004	1854	24	1	0	18	1	4	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/1	a0005	1854	17	0	0	16	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	1/0	a0006	1854	12	11	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0007	1854	6	4	0	1	0	1	copy fasta	CFAP44	chr3	113281930	113446493