JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CFAP44_chr3_113281930_113446493	0/0	a0008	1854	4	4	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0009	1854	4	4	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0010	1854	3	0	0	3	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0011	1854	3	3	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0012	1854	3	0	3	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0013	1854	3	3	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0014	1854	3	3	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0015	1854	2	0	0	2	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0016	1854	2	1	1	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0017	1854	2	2	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0018	1854	2	0	0	2	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0019	1854	2	2	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0020	1854	2	2	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0021	1854	2	2	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0022	1854	1	0	0	1	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0023	1854	1	0	0	1	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0024	1854	1	0	0	1	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0025	1854	1	0	0	1	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0026	1854	1	1	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0027	1854	1	0	0	1	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0028	1854	1	1	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0029	1854	1	1	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0030	1854	1	0	1	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0031	1854	1	0	0	0	0	1	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0032	1854	1	1	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0033	1854	1	0	1	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0034	1854	1	1	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0035	1854	1	1	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0036	1854	1	0	0	0	0	1	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	a0037	1854	1	0	0	1	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP45_chr1_159867364_159905165	1/1	a0001	551	337	51	67	166	13	38	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	a0002	551	34	22	3	8	0	1	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	a0003	551	16	14	1	0	1	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	a0004	551	6	0	0	6	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	a0005	551	3	0	0	3	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	a0006	551	2	2	0	0	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	a0007	551	2	2	0	0	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	a0008	551	2	2	0	0	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	a0009	551	1	1	0	0	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	a0010	551	1	0	0	1	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	a0011	551	1	0	0	1	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	a0012	472	1	0	0	1	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	a0013	551	1	0	1	0	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	a0014	551	1	0	1	0	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	a0015	551	1	0	0	0	0	1	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	a0016	120	1	0	1	0	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP46_chr10_132803392_132947570	0/0	a0000	0	1	0	0	0	1	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/1	a0001	2715	43	0	11	24	3	4	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0002	2715	42	0	10	23	1	8	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0003	2715	13	1	2	6	0	4	copy fasta	CFAP46	chr10	132803392	132947570