JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CFAP46_chr10_132803392_132947570	0/0	a0004	2715	12	1	6	2	2	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0005	2715	11	5	0	5	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0006	2715	9	1	6	1	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	1/0	a0007	2715	7	0	2	3	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0008	2715	6	6	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0009	2715	5	2	1	0	0	2	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0010	2715	5	5	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0011	2715	4	0	0	4	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0012	2715	4	3	1	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0013	2715	3	3	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0014	2715	3	0	2	0	1	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0015	2715	3	0	0	1	0	2	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0016	2715	3	0	0	0	0	3	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0017	2715	3	3	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0018	2715	2	1	1	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0019	2715	2	0	1	0	1	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0020	2715	2	0	0	1	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0021	2715	2	2	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0022	2715	2	2	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0023	2715	2	1	0	0	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0024	2715	2	2	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0025	2715	2	1	1	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0026	2715	2	1	1	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0027	2715	2	1	0	0	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0028	2715	2	0	0	2	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0029	2715	2	2	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0030	2715	1	0	1	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0031	2715	1	0	0	0	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0032	2715	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0033	2715	1	0	0	0	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0034	2715	1	0	0	0	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0035	2715	1	0	1	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0036	2715	1	0	0	0	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0037	2715	1	0	0	0	1	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0038	2715	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0039	2715	1	0	0	1	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0040	2715	1	0	0	1	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0041	2715	1	0	0	0	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0042	2715	1	0	0	1	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0043	2715	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0044	2715	1	0	0	0	1	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0045	2715	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0046	2715	1	0	1	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0047	2715	1	0	1	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0048	2715	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0049	2715	1	0	1	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0050	2715	1	0	0	0	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0051	2715	1	0	0	0	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0052	2715	1	0	0	0	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0053	2715	1	0	0	1	0	0	copy fasta	CFAP46	chr10	132803392	132947570