JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CFAP46_chr10_132803392_132947570	0/0	a0054	2715	1	0	0	1	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0055	2715	1	0	0	0	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0056	2715	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0057	2715	1	0	0	1	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0058	2715	1	0	0	1	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0059	2715	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0060	2715	1	0	1	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0061	2715	1	0	1	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0062	2715	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0063	2715	1	0	0	0	1	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0064	2715	1	0	1	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0065	2715	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0066	2715	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0067	2715	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0068	2715	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0069	2715	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0070	2707	1	0	1	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0071	2715	1	0	0	0	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0072	2715	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0073	2715	1	0	0	1	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	a0074	2715	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP47_chrX_35914734_36390317	1/1	a0001	3187	76	2	14	45	3	10	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0002	3187	16	0	0	13	0	3	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0003	3187	12	2	1	4	1	4	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0004	3187	11	0	3	7	0	1	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0005	3187	8	8	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0006	3187	7	5	0	0	0	2	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0007	3187	7	7	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0008	3187	5	0	5	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0009	3187	5	0	0	2	1	2	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0010	3187	5	5	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0011	3187	5	5	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0012	3187	4	4	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0013	3187	3	0	2	1	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0014	3187	3	3	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0015	3187	3	3	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0016	3187	3	3	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0017	3187	3	3	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0018	3187	2	0	0	2	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0019	3187	2	1	1	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0020	3187	2	0	2	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0021	3187	2	2	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0022	3	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0023	3187	1	0	0	1	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0024	3187	1	0	1	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0025	1585	1	0	0	1	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0026	3187	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0027	3187	1	0	1	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0028	3187	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0029	1012	1	0	0	1	0	0	copy fasta	CFAP47	chrX	35914734	36390317