JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CFAP47_chrX_35914734_36390317	0/0	a0030	3187	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0031	3187	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0032	3187	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0033	3187	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0034	3187	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0035	1283	1	0	0	1	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0036	3187	1	0	0	1	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0037	3187	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0038	3187	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0039	3187	1	0	0	0	0	1	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0040	3187	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0041	3187	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0042	3187	1	0	0	0	0	1	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0043	3187	1	0	1	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0044	1838	1	0	0	0	0	1	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0045	3187	1	0	0	0	0	1	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0046	3187	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0047	3187	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0048	3187	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0049	3187	1	0	1	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0050	3187	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0051	3187	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0052	3187	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	a0053	3187	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP52_chr17_9571642_9648447	1/0	a0001	620	153	55	28	55	4	10	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	0/1	a0002	620	151	30	29	62	7	22	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	0/0	a0003	620	4	0	0	4	0	0	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	0/0	a0004	620	2	0	0	2	0	0	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	0/0	a0005	620	1	0	0	1	0	0	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	0/0	a0006	620	1	1	0	0	0	0	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	0/0	a0007	620	1	1	0	0	0	0	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	0/0	a0008	620	1	0	1	0	0	0	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	0/0	a0009	620	1	1	0	0	0	0	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	0/0	a0010	620	1	0	0	0	1	0	copy fasta	CFAP52	chr17	9571642	9648447
CFAP53_chr18_50222193_50271495	1/1	a0001	514	267	80	48	102	10	25	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	a0002	514	76	1	11	62	0	2	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	a0003	514	47	5	14	9	6	13	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	a0004	514	3	3	0	0	0	0	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	a0005	514	2	2	0	0	0	0	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	a0006	514	1	0	0	1	0	0	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	a0007	404	1	0	0	1	0	0	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	a0008	514	1	1	0	0	0	0	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	a0009	514	1	0	0	1	0	0	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	a0010	514	1	0	0	0	0	1	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	a0011	514	1	0	1	0	0	0	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	a0012	514	1	0	0	0	0	1	copy fasta	CFAP53	chr18	50222193	50271495
CFAP54_chr12_96484577_96880555	0/0	a0001	3096	44	14	5	16	4	5	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0002	3096	35	8	1	23	2	1	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/1	a0003	3096	33	7	5	16	0	4	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0004	3096	19	8	8	1	0	2	copy fasta	CFAP54	chr12	96484577	96880555