Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADAM21_chr14_70447174_70464905	0/0	a0009	722	2	1	1	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	a0010	722	2	0	0	2	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	a0011	722	1	1	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	a0012	722	1	1	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	a0013	722	1	1	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	a0014	722	1	1	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	a0015	722	1	1	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	a0016	722	1	1	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	a0017	722	1	0	0	1	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	a0018	722	1	1	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	a0019	722	1	0	0	0	0	1	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	a0020	722	1	0	0	1	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	a0021	722	1	0	0	1	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM22_chr7_87929251_88207889	0/1	a0001	964	141	62	27	34	9	8	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	1/0	a0002	964	47	1	7	28	2	8	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	a0003	964	22	9	4	5	1	3	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	a0004	964	5	0	0	5	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	a0005	964	3	1	0	2	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	a0006	964	2	0	0	2	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	a0007	965	2	2	0	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	a0008	964	1	0	0	1	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	a0009	964	1	0	0	1	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	a0010	964	1	0	0	0	0	1	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	a0011	964	1	0	1	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	a0012	964	1	0	0	1	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	a0013	964	1	1	0	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	a0014	964	1	0	1	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	a0015	964	1	0	0	1	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM23_chr2_206438532_206626127	1/1	a0001	832	354	87	68	153	14	30	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	a0002	832	1	0	0	0	0	1	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	a0003	832	1	1	0	0	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	a0004	832	1	0	0	0	0	1	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	a0005	832	1	0	0	1	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM28_chr8_24289069_24364014	0/1	a0001	775	264	44	46	135	11	27	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	a0002	775	34	3	4	21	0	6	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	a0003	775	14	12	2	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	1/0	a0004	775	9	5	0	0	0	3	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	a0005	775	4	4	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	a0006	775	3	3	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	a0007	775	3	3	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	a0008	775	3	0	0	3	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	a0009	775	2	0	0	1	0	1	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	a0010	775	1	0	0	0	1	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	a0011	775	1	1	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	a0012	775	1	0	0	1	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	a0013	775	1	0	0	1	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	a0014	775	1	0	0	1	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	a0015	775	1	1	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	a0016	775	1	0	0	1	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	a0017	775	1	0	0	1	0	0	copy fasta	ADAM28	chr8	24289069	24364014