JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CFAP54_chr12_96484577_96880555	0/0	a0005	3096	18	0	4	14	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0006	3096	15	1	6	8	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0007	3096	8	4	2	0	0	2	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0008	3096	8	0	0	2	2	4	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0009	3096	8	0	0	8	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0010	3096	4	0	4	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0011	3096	4	0	1	0	3	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0012	3096	4	1	0	3	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0013	3096	3	1	2	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0014	3096	3	3	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0015	3096	3	3	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0016	3096	2	0	0	0	0	2	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0017	3096	2	0	0	0	0	2	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0018	3096	2	0	0	2	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0019	3096	2	2	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0020	3096	2	0	1	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0021	3096	2	0	0	0	1	1	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0022	3096	2	0	1	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0023	3096	2	2	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	1/0	a0024	3096	2	0	1	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0025	3096	2	0	0	2	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0026	3096	2	2	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0027	3096	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0028	3096	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0029	3096	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0030	3096	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0031	3096	1	0	0	0	0	1	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0032	3096	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0033	3096	1	0	0	0	0	1	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0034	3096	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0035	3096	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0036	3096	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0037	617	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0038	3096	1	0	1	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0039	3096	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0040	3096	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0041	3096	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0042	3096	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0043	3096	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0044	3096	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0045	3096	1	0	1	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0046	3096	1	0	1	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0047	3096	1	0	1	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0048	3096	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0049	3096	1	0	1	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0050	3096	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0051	3096	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0052	3096	1	0	0	0	0	1	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0053	3096	1	0	1	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0054	3096	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555