JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CFAP54_chr12_96484577_96880555	0/0	a0055	3096	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0056	3096	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0057	3096	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0058	3096	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0059	3096	1	0	1	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0060	3096	1	0	0	0	0	1	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0061	3096	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0062	3096	1	0	0	0	0	1	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	a0063	3096	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP57_chr1_43167330_43259358	1/0	a0001	1250	109	19	21	52	2	14	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/1	a0002	1250	94	48	24	0	3	18	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	a0003	1250	62	0	13	44	0	5	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	a0004	1250	7	6	1	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	a0005	1250	7	7	0	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	a0006	1250	3	2	1	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	a0007	1250	3	0	2	0	1	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	a0008	1250	3	0	0	3	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	a0009	1250	3	3	0	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	a0010	1250	2	0	0	2	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	a0011	1250	2	0	0	2	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	a0012	1250	2	0	0	2	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	a0013	1250	1	0	0	0	0	1	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	a0014	1250	1	0	0	0	0	1	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	a0015	1250	1	0	0	0	0	1	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	a0016	1250	1	1	0	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	a0017	1250	1	1	0	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	a0018	1250	1	1	0	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	a0019	1250	1	1	0	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	a0020	1250	1	0	0	1	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	a0021	1250	1	0	0	1	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	a0022	1250	1	1	0	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	a0023	1043	1	0	0	1	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP58_chr10_104348833_104460102	1/1	a0001	872	199	61	37	70	6	23	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	a0002	872	80	16	10	41	3	10	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	a0003	872	7	7	0	0	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	a0004	872	4	0	0	4	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	a0005	872	4	0	0	4	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	a0006	872	2	0	0	2	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	a0007	872	2	0	2	0	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	a0008	872	1	0	0	0	0	1	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	a0009	872	1	1	0	0	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	a0010	872	1	1	0	0	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	a0011	872	1	0	0	0	1	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	a0012	872	1	1	0	0	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	a0013	872	1	0	0	0	0	1	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	a0014	872	1	1	0	0	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	a0015	872	1	0	0	1	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	a0016	872	1	0	0	0	0	1	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	a0017	872	1	0	1	0	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP61_chr20_20047532_20365698	1/1	a0001	1237	112	34	29	29	2	16	copy fasta	CFAP61	chr20	20047532	20365698