JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CFAP61_chr20_20047532_20365698	0/0	a0002	1237	80	23	22	25	5	5	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	a0003	1237	8	0	1	0	3	4	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	a0004	1237	4	4	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	a0005	1237	4	4	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	a0006	1237	3	2	1	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	a0007	1237	3	3	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	a0008	1237	2	2	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	a0009	1237	2	2	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	a0010	1237	2	0	2	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	a0011	1237	1	0	1	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	a0012	1237	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	a0013	1237	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	a0014	1237	1	0	0	1	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	a0015	1237	1	0	0	1	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	a0016	1237	1	0	1	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	a0017	1237	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	a0018	1237	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	a0019	1237	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	a0020	1237	1	0	1	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	a0021	1237	1	0	1	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	a0022	1237	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	a0023	1237	1	0	0	0	0	1	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	a0024	1237	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	a0025	1237	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	a0026	1237	1	0	1	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP65_chr2_218997846_219046516	1/0	a0001	1925	100	7	29	48	1	14	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/1	a0002	1925	56	3	19	23	3	7	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0003	1925	43	8	3	27	1	4	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0004	1925	20	15	0	1	1	3	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0005	1925	13	10	1	2	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0006	1925	11	0	0	11	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0007	1925	11	8	0	3	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0008	1925	8	8	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0009	1925	6	4	2	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0010	1925	5	5	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0011	1925	4	4	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0012	1925	4	0	0	4	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0013	1925	3	3	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0014	1925	3	0	0	3	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0015	1925	3	0	0	3	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0016	1925	2	0	0	2	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0017	1925	2	0	0	2	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0018	1925	2	0	0	2	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0019	1925	2	2	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0020	1925	2	2	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0021	1925	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0022	1925	1	0	1	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0023	1155	1	0	0	1	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0024	1925	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	a0025	1925	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516